Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QPK28_RS09395 Genome accession   NZ_CP126576
Coordinates   1830718..1831968 (+) Length   416 a.a.
NCBI ID   WP_044790018.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CQMB003     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1825718..1836968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK28_RS09370 - 1827032..1827763 (+) 732 WP_009328491.1 SDR family oxidoreductase -
  QPK28_RS09375 - 1827834..1828091 (+) 258 WP_003181915.1 DUF3243 domain-containing protein -
  QPK28_RS09380 - 1828339..1829130 (+) 792 WP_003181917.1 YmfK family protein -
  QPK28_RS09385 - 1829148..1830050 (+) 903 WP_044790020.1 RodZ domain-containing protein -
  QPK28_RS09390 pgsA 1830117..1830698 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QPK28_RS09395 cinA 1830718..1831968 (+) 1251 WP_044790018.1 competence/damage-inducible protein A Machinery gene
  QPK28_RS09400 recA 1832135..1833181 (+) 1047 WP_003181926.1 recombinase RecA Machinery gene
  QPK28_RS09405 rny 1833522..1835081 (+) 1560 WP_003181928.1 ribonuclease Y -
  QPK28_RS09410 - 1835168..1835965 (+) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  QPK28_RS09415 spoVS 1836167..1836427 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45657.97 Da        Isoelectric Point: 5.0686

>NTDB_id=838791 QPK28_RS09395 WP_044790018.1 1830718..1831968(+) (cinA) [Bacillus licheniformis strain CQMB003]
MKLERKAEIIAVGSELLLGQIVNTNAQFISRHLAEIGINVFYHTAVGDNPARLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSREKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPEETNRLL
KETEDRILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VSEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=838791 QPK28_RS09395 WP_044790018.1 1830718..1831968(+) (cinA) [Bacillus licheniformis strain CQMB003]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGCTCTGAGCTTCTGCTCGGACAAATCGTTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAATCCGGCACGCCTTA
AACAAGTCATTCAGACAGCGCAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATCTG
ACAAAAGAAACGATCGCCGAAGTTGTCGGGCGCCCTCTTAAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTCGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAGGGAAAAGATCGTGTCAAGGGTGCT
GCGCTTCTTCGGCATCGGTGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CTCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTTACGGCAAAGCATGCGGATCCGGAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCGCATTTTGGAGCGGGTCGGAGAATTCTTTTACGGGTATGATGATACATCCCTCGCAGAAGAGCT
TGCGAAAGCATGCCGGAGCAAGGGTATGACTCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCCGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTTCGGAAGACACGCTGCAGCGCTATGGTGCGGTCAGCGCGCAATGCGCTAAAGAGCTCGCCGCAGGCATCAGAGTCAA
GACAGGAAGCGATATCGGCATCAGCTTCACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCTGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAGGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGGAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.202

100

0.762
  cinA Streptococcus pneumoniae TIGR4

47.733

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.494

100

0.478
  cinA Streptococcus mitis SK321

47.494

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.255

100

0.476
  cinA Streptococcus pneumoniae R6

47.255

100

0.476
  cinA Streptococcus pneumoniae D39

47.017

100

0.474
  cinA Streptococcus mutans UA159

46.585

98.558

0.459
  cinA Streptococcus suis isolate S10

41.414

95.192

0.394