Detailed information NTG0838338

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: QPL77_RS16925
• Genome accession: NZ_CP126521
• Coordinates: 3280570..3281256 (-)
• Length: 228 a.a.
• NCBI ID: WP_211063637.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain Monterrey_S2
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3275570..3286256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPL77_RS16890 (QPL77_16890)	fliW	3275704..3276138 (-)	435	WP_144523408.1	flagellar assembly protein FliW	-
QPL77_RS16895 (QPL77_16895)	-	3276167..3276745 (-)	579	WP_211063635.1	DUF6470 family protein	-
QPL77_RS16900 (QPL77_16900)	flgL	3276794..3277705 (-)	912	WP_144523410.1	flagellar hook-associated protein FlgL	-
QPL77_RS16905 (QPL77_16905)	flgK	3277715..3279235 (-)	1521	WP_144523411.1	flagellar hook-associated protein FlgK	-
QPL77_RS16910 (QPL77_16910)	-	3279251..3279733 (-)	483	WP_144523412.1	flagellar protein FlgN	-
QPL77_RS16915 (QPL77_16915)	flgM	3279751..3280014 (-)	264	WP_211063636.1	flagellar biosynthesis anti-sigma factor FlgM	-
QPL77_RS16920 (QPL77_16920)	-	3280094..3280513 (-)	420	WP_144523414.1	TIGR03826 family flagellar region protein	-
QPL77_RS16925 (QPL77_16925)	comFC	3280570..3281256 (-)	687	WP_211063637.1	ComF family protein	Machinery gene
QPL77_RS16930 (QPL77_16930)	-	3281253..3281546 (-)	294	WP_144523415.1	late competence development ComFB family protein	-
QPL77_RS16935 (QPL77_16935)	comFA	3281613..3282992 (-)	1380	WP_211063638.1	DEAD/DEAH box helicase	Machinery gene
QPL77_RS16940 (QPL77_16940)	-	3283112..3283954 (-)	843	WP_144523417.1	DegV family protein	-
QPL77_RS16945 (QPL77_16945)	degU	3284172..3284861 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
QPL77_RS16950 (QPL77_16950)	degS	3284926..3286101 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25977.32 Da
• Isoelectric Point: 10.0304

>NTDB_id=838338 QPL77_RS16925 WP_211063637.1 3280570..3281256(-) (comFC) [Bacillus pumilus strain Monterrey_S2]
MICLICEGNFVASFTWKSLLLLNDDRLCIACKHHLEKIKRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKHDAQAVFKRSFSMKEPVLIPIPLSKERQKERGFNQSVIIASLLGQPTLQPLVKIH
QSKQSKKKKNERLDQKGMFQIKQTDAIVQRDIILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=838338 QPL77_RS16925 WP_211063637.1 3280570..3281256(-) (comFC) [Bacillus pumilus strain Monterrey_S2]
TTGATTTGCCTAATTTGTGAAGGGAATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTCT
ATGTATAGCATGTAAGCATCACTTAGAAAAAATTAAACGTCCAATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAACAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACATGA
TGCCCAAGCGGTATTTAAGCGCTCCTTTTCAATGAAAGAACCTGTGCTGATCCCAATTCCTTTAAGTAAAGAAAGACAAA
AGGAAAGAGGATTTAATCAGTCCGTCATAATTGCGTCTTTGCTTGGTCAGCCGACTCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATATTATCTTAATTGACGACATTTATACAACAGGGGCCACTATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTAATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (137-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.87	100	0.513
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	38.865	100	0.39
comFC/cflB	Streptococcus mitis NCTC 12261	38.865	100	0.39