Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QPL77_RS16935 Genome accession   NZ_CP126521
Coordinates   3281613..3282992 (-) Length   459 a.a.
NCBI ID   WP_211063638.1    Uniprot ID   -
Organism   Bacillus pumilus strain Monterrey_S2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3276613..3287992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS16900 (QPL77_16900) flgL 3276794..3277705 (-) 912 WP_144523410.1 flagellar hook-associated protein FlgL -
  QPL77_RS16905 (QPL77_16905) flgK 3277715..3279235 (-) 1521 WP_144523411.1 flagellar hook-associated protein FlgK -
  QPL77_RS16910 (QPL77_16910) - 3279251..3279733 (-) 483 WP_144523412.1 flagellar protein FlgN -
  QPL77_RS16915 (QPL77_16915) flgM 3279751..3280014 (-) 264 WP_211063636.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPL77_RS16920 (QPL77_16920) - 3280094..3280513 (-) 420 WP_144523414.1 TIGR03826 family flagellar region protein -
  QPL77_RS16925 (QPL77_16925) comFC 3280570..3281256 (-) 687 WP_211063637.1 ComF family protein Machinery gene
  QPL77_RS16930 (QPL77_16930) - 3281253..3281546 (-) 294 WP_144523415.1 late competence development ComFB family protein -
  QPL77_RS16935 (QPL77_16935) comFA 3281613..3282992 (-) 1380 WP_211063638.1 DEAD/DEAH box helicase Machinery gene
  QPL77_RS16940 (QPL77_16940) - 3283112..3283954 (-) 843 WP_144523417.1 DegV family protein -
  QPL77_RS16945 (QPL77_16945) degU 3284172..3284861 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QPL77_RS16950 (QPL77_16950) degS 3284926..3286101 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QPL77_RS16955 (QPL77_16955) - 3286323..3286991 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52260.07 Da        Isoelectric Point: 10.0224

>NTDB_id=838339 QPL77_RS16935 WP_211063638.1 3281613..3282992(-) (comFA) [Bacillus pumilus strain Monterrey_S2]
MNMDKEMELGKHLQSRHLLTAETRCLQSDLDWLEEKGLVIRTPAIERKANGLICSRCGVSKNQYFAHSPCDKCQKDCVYC
RSCIVMGKTKECGFLYEWTGPQIEETCDTELTWQGNLSKGQKRASEKLIEAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFHGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAVRKKGVKVYLSATPSKKMIRDVTGGQLQAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLSPIVMNWMQK
YITKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDNKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=838339 QPL77_RS16935 WP_211063638.1 3281613..3282992(-) (comFA) [Bacillus pumilus strain Monterrey_S2]
TTGAACATGGATAAAGAAATGGAACTAGGGAAGCACCTTCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTTACA
ATCTGATTTAGATTGGTTGGAGGAGAAAGGGTTAGTGATCCGGACACCTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GCAGCAGATGTGGTGTATCAAAAAATCAATACTTTGCCCACTCTCCTTGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCGTGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATAGAAGAAACATG
TGACACAGAATTAACGTGGCAGGGAAACTTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCGAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGCGTTTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
CCACGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTAATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGACGTGCTCATTATTGATGAAGTGGACGCTTTTCCTTATTCAATCGATGAA
CGCCTCCAATTTGCTGTTTTAAAGGCAGTGAGAAAGAAAGGGGTTAAGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAGGGATGTAACTGGTGGACAACTACAAGCTATAAAAATTCCTCTTCGCTTTCACCAACAACCTTTACCGGTCCCAT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTTTCACCTATAGTAATGAATTGGATGCAGAAA
TATATTACAAAAAAGAGAAGGGTTTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGCGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTTCAGCAATTTAGAGATAACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGAGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCCGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(323-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.229

97.821

0.521