Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QPL77_RS16945 Genome accession   NZ_CP126521
Coordinates   3284172..3284861 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain Monterrey_S2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3279172..3289861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS16910 (QPL77_16910) - 3279251..3279733 (-) 483 WP_144523412.1 flagellar protein FlgN -
  QPL77_RS16915 (QPL77_16915) flgM 3279751..3280014 (-) 264 WP_211063636.1 flagellar biosynthesis anti-sigma factor FlgM -
  QPL77_RS16920 (QPL77_16920) - 3280094..3280513 (-) 420 WP_144523414.1 TIGR03826 family flagellar region protein -
  QPL77_RS16925 (QPL77_16925) comFC 3280570..3281256 (-) 687 WP_211063637.1 ComF family protein Machinery gene
  QPL77_RS16930 (QPL77_16930) - 3281253..3281546 (-) 294 WP_144523415.1 late competence development ComFB family protein -
  QPL77_RS16935 (QPL77_16935) comFA 3281613..3282992 (-) 1380 WP_211063638.1 DEAD/DEAH box helicase Machinery gene
  QPL77_RS16940 (QPL77_16940) - 3283112..3283954 (-) 843 WP_144523417.1 DegV family protein -
  QPL77_RS16945 (QPL77_16945) degU 3284172..3284861 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QPL77_RS16950 (QPL77_16950) degS 3284926..3286101 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QPL77_RS16955 (QPL77_16955) - 3286323..3286991 (+) 669 WP_012011434.1 YigZ family protein -
  QPL77_RS16960 (QPL77_16960) - 3286976..3288067 (+) 1092 WP_211063639.1 LCP family protein -
  QPL77_RS16965 (QPL77_16965) - 3288103..3289170 (-) 1068 WP_144523660.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=838340 QPL77_RS16945 WP_008348273.1 3284172..3284861(-) (degU) [Bacillus pumilus strain Monterrey_S2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=838340 QPL77_RS16945 WP_008348273.1 3284172..3284861(-) (degU) [Bacillus pumilus strain Monterrey_S2]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATTGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAACTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACGCATGCATTGAAAACAGGAGCAAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCCGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCATGAAGTGTATCCTGAAATTCGC
AGACCACTTCATATATTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTCGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996