Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QPL77_RS08170 Genome accession   NZ_CP126521
Coordinates   1653336..1654586 (+) Length   416 a.a.
NCBI ID   WP_211064331.1    Uniprot ID   -
Organism   Bacillus pumilus strain Monterrey_S2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1648336..1659586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS08145 (QPL77_08145) - 1649745..1650473 (+) 729 WP_211064330.1 SDR family oxidoreductase -
  QPL77_RS08150 (QPL77_08150) - 1650547..1650804 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  QPL77_RS08155 (QPL77_08155) - 1650936..1651727 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  QPL77_RS08160 (QPL77_08160) - 1651751..1652662 (+) 912 WP_144521489.1 helix-turn-helix domain-containing protein -
  QPL77_RS08165 (QPL77_08165) pgsA 1652738..1653319 (+) 582 WP_284553832.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QPL77_RS08170 (QPL77_08170) cinA 1653336..1654586 (+) 1251 WP_211064331.1 competence/damage-inducible protein A Machinery gene
  QPL77_RS08175 (QPL77_08175) recA 1654763..1655803 (+) 1041 WP_144503276.1 recombinase RecA Machinery gene
  QPL77_RS08180 (QPL77_08180) rny 1656272..1657834 (+) 1563 WP_003211958.1 ribonuclease Y -
  QPL77_RS08185 (QPL77_08185) - 1657923..1658717 (+) 795 WP_012010021.1 TIGR00282 family metallophosphoesterase -
  QPL77_RS08190 (QPL77_08190) spoVS 1658919..1659179 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45647.82 Da        Isoelectric Point: 5.0623

>NTDB_id=838314 QPL77_RS08170 WP_211064331.1 1653336..1654586(+) (cinA) [Bacillus pumilus strain Monterrey_S2]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHDKGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=838314 QPL77_RS08170 WP_211064331.1 1653336..1654586(+) (cinA) [Bacillus pumilus strain Monterrey_S2]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACAAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTTGTGAACC
GGTTTGGTATGGCTCCGGGTATGTTTATTCAAGAAAACGATACGTTTTATATGCTTCTTCCAGGCCCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAGCCGCTCATATCTGAGAAACTAGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTCTTTGGAATTGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTTGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAGACGGAAGCGAAAATTTTAGCGCGAGTAGGAGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGCGAAGC
TTCTAAGGCCTTGCACGATAAGGGGAAAACAGTGGCAGCGGCTGAGAGCCTAACAGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCGTCGTCGATTTTAAGCGGGAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACATTGTCCTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGTTAGAAAGCT
CACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCGGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACTGGAAGCCGGTCGGGCATTCGCAAACGC
GCTGTGAAATATGGTCTTCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.506

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.268

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.268

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.476
  cinA Streptococcus pneumoniae R6

47.031

100

0.476
  cinA Streptococcus pneumoniae D39

46.793

100

0.474
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394