Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QOM09_RS19055 Genome accession   NZ_CP126474
Coordinates   3720860..3722098 (-) Length   412 a.a.
NCBI ID   WP_053512446.1    Uniprot ID   A0A9X6KHF7
Organism   Bacillus thuringiensis strain DHC4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3715860..3727098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS19035 (QOM09_19035) spoVS 3716270..3716530 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  QOM09_RS19040 (QOM09_19040) - 3716680..3717474 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  QOM09_RS19045 (QOM09_19045) rny 3717637..3719202 (-) 1566 WP_000099769.1 ribonuclease Y -
  QOM09_RS19050 (QOM09_19050) recA 3719684..3720715 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  QOM09_RS19055 (QOM09_19055) cinA 3720860..3722098 (-) 1239 WP_053512446.1 competence/damage-inducible protein CinA Machinery gene
  QOM09_RS19060 (QOM09_19060) pgsA 3722119..3722697 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QOM09_RS19065 (QOM09_19065) - 3722762..3723673 (-) 912 WP_000137491.1 RodZ domain-containing protein -
  QOM09_RS19070 (QOM09_19070) - 3723695..3724480 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  QOM09_RS19075 (QOM09_19075) - 3724619..3724867 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  QOM09_RS19080 (QOM09_19080) - 3724943..3725656 (-) 714 WP_000759607.1 SDR family oxidoreductase -
  QOM09_RS19085 (QOM09_19085) - 3725757..3727043 (-) 1287 WP_000411982.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45507.85 Da        Isoelectric Point: 5.3499

>NTDB_id=838086 QOM09_RS19055 WP_053512446.1 3720860..3722098(-) (cinA) [Bacillus thuringiensis strain DHC4]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=838086 QOM09_RS19055 WP_053512446.1 3720860..3722098(-) (cinA) [Bacillus thuringiensis strain DHC4]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCAACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAATTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAGCCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGTAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.01

100

0.58
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369