Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QLQ03_RS17300 Genome accession   NZ_CP126456
Coordinates   3362275..3363525 (+) Length   416 a.a.
NCBI ID   WP_081114823.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3357275..3368525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS17275 - 3358686..3359414 (+) 729 WP_035700804.1 SDR family oxidoreductase -
  QLQ03_RS17280 - 3359488..3359745 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  QLQ03_RS17285 - 3359877..3360668 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  QLQ03_RS17290 - 3360692..3361603 (+) 912 WP_008344690.1 helix-turn-helix domain-containing protein -
  QLQ03_RS17295 pgsA 3361677..3362258 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QLQ03_RS17300 cinA 3362275..3363525 (+) 1251 WP_081114823.1 competence/damage-inducible protein A Machinery gene
  QLQ03_RS17305 recA 3363703..3364746 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  QLQ03_RS17310 rny 3365047..3366609 (+) 1563 WP_003211958.1 ribonuclease Y -
  QLQ03_RS17315 - 3366699..3367493 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  QLQ03_RS17320 spoVS 3367696..3367956 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45627.77 Da        Isoelectric Point: 4.9223

>NTDB_id=837930 QLQ03_RS17300 WP_081114823.1 3362275..3363525(+) (cinA) [Bacillus altitudinis strain KRS010]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGNTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=837930 QLQ03_RS17300 WP_081114823.1 3362275..3363525(+) (cinA) [Bacillus altitudinis strain KRS010]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CATCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTAATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis SK321

47.847

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.476
  cinA Streptococcus pneumoniae R6

47.368

100

0.476
  cinA Streptococcus pneumoniae D39

47.129

100

0.474
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392