Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNN06_RS11080 Genome accession   NZ_CP126144
Coordinates   2211732..2212988 (+) Length   418 a.a.
NCBI ID   WP_213116295.1    Uniprot ID   A0A942U3L5
Organism   Neobacillus sp. 114     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2206732..2217988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNN06_RS11050 - 2206768..2208063 (+) 1296 WP_284037554.1 pitrilysin family protein -
  QNN06_RS11055 - 2208124..2208846 (+) 723 WP_284037555.1 SDR family oxidoreductase -
  QNN06_RS11060 - 2208927..2209172 (+) 246 WP_213116299.1 DUF3243 domain-containing protein -
  QNN06_RS11065 - 2209328..2210116 (+) 789 WP_213116298.1 DUF3388 domain-containing protein -
  QNN06_RS11070 - 2210137..2211048 (+) 912 WP_213116297.1 helix-turn-helix domain-containing protein -
  QNN06_RS11075 pgsA 2211127..2211705 (+) 579 WP_213116296.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNN06_RS11080 cinA 2211732..2212988 (+) 1257 WP_213116295.1 competence/damage-inducible protein A Machinery gene
  QNN06_RS11085 - 2213610..2213801 (+) 192 Protein_2118 DNA recombination/repair protein RecA -
  QNN06_RS11090 - 2213861..2214949 (+) 1089 WP_217037245.1 endonuclease domain-containing protein -
  QNN06_RS11095 - 2215240..2215656 (+) 417 Protein_2120 DNA recombination/repair protein RecA -
  QNN06_RS11100 - 2215991..2216422 (+) 432 Protein_2121 DNA recombination/repair protein RecA -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44904.35 Da        Isoelectric Point: 4.9410

>NTDB_id=836948 QNN06_RS11080 WP_213116295.1 2211732..2212988(+) (cinA) [Neobacillus sp. 114]
MNAEIIAVGSELLLGQIVNTNARFLSQQLAELGVDVYFHTVVGDNPDRLKAAIDIAEKRSEIIIFTGGLGPTKDDLTKET
IARHIGTELAHDETALESIEDYFKRTNRVMTENNRKQALVLKGSEVLPNDFGMAPGMVMKTGGHIYMLLPGPPKEMEPMF
SRYGRQALASATGSTEQIVSRVLRFFGIGEAALETEIIDLIDAQSNPTIAPLAGDGEVTLRLTAKHLDTAAAEAMLDEVE
AEIRGRVGQFIYGYGGSSLLEELTKVLKARQLTITAAESLTGGLFQQEITSISGASSVFKGGVVCYANEIKRDVVGVRQE
TLDQHGAVSEECARELAENSARIFGTDIGISFTGVAGPDELEGKPVGTVYIGMAVAGKPTVVEKLTLAGGRAANRVRAVK
FGCYYLLKLLKAKPQDTV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=836948 QNN06_RS11080 WP_213116295.1 2211732..2212988(+) (cinA) [Neobacillus sp. 114]
GTGAATGCTGAGATTATTGCAGTTGGCTCAGAGCTTTTACTCGGGCAGATTGTGAATACGAATGCACGATTTCTATCTCA
GCAATTAGCTGAGCTCGGAGTGGATGTATATTTTCATACGGTGGTTGGCGATAACCCTGACAGGCTGAAGGCAGCGATTG
ACATAGCCGAGAAGCGTTCGGAAATCATTATTTTTACTGGCGGACTGGGACCGACCAAGGATGATTTAACGAAGGAAACA
ATTGCCCGCCATATTGGTACAGAACTTGCGCATGATGAAACGGCATTAGAATCGATTGAGGATTATTTCAAACGAACAAA
CCGGGTAATGACGGAGAATAACAGGAAACAGGCATTGGTTTTGAAGGGATCTGAAGTTTTGCCGAATGACTTTGGCATGG
CTCCGGGTATGGTGATGAAAACGGGCGGTCATATTTATATGCTCCTGCCAGGACCTCCAAAGGAAATGGAGCCGATGTTT
TCCCGCTATGGCAGACAGGCGCTTGCTTCGGCAACCGGCTCGACGGAACAAATTGTTTCCCGAGTGCTGCGCTTTTTTGG
GATTGGCGAGGCGGCCCTGGAAACAGAAATTATCGATTTGATTGATGCTCAAAGCAACCCGACGATTGCGCCGCTTGCAG
GTGATGGGGAAGTGACGTTGCGCTTGACTGCAAAGCACTTGGATACTGCGGCTGCTGAGGCAATGCTGGATGAAGTTGAG
GCTGAGATTCGCGGGAGGGTCGGACAATTTATTTATGGATATGGTGGCTCCTCGTTGTTAGAAGAACTGACTAAGGTATT
AAAGGCTCGGCAATTAACCATTACAGCAGCTGAGAGTTTAACAGGCGGGCTGTTCCAGCAGGAGATTACCTCGATTTCTG
GAGCAAGCTCTGTATTCAAAGGCGGCGTTGTATGTTATGCCAATGAAATTAAGCGGGATGTTGTCGGAGTTAGGCAGGAA
ACGCTTGATCAGCATGGGGCTGTAAGTGAAGAATGTGCCCGTGAGCTGGCGGAAAATTCGGCTCGGATTTTTGGGACTGA
TATCGGAATTAGCTTTACCGGTGTGGCCGGACCGGATGAACTGGAAGGGAAACCGGTTGGGACGGTTTATATTGGGATGG
CTGTTGCTGGTAAGCCGACGGTCGTAGAAAAATTAACTCTTGCCGGTGGAAGGGCCGCAAACAGGGTGAGGGCTGTTAAA
TTTGGGTGTTATTATCTATTAAAGTTATTAAAAGCTAAACCACAGGATACCGTTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.827

98.325

0.598
  cinA Streptococcus mitis SK321

48.529

97.608

0.474
  cinA Streptococcus pneumoniae TIGR4

48.284

97.608

0.471
  cinA Streptococcus mitis NCTC 12261

48.284

97.608

0.471
  cinA Streptococcus pneumoniae Rx1

47.794

97.608

0.467
  cinA Streptococcus pneumoniae R6

47.794

97.608

0.467
  cinA Streptococcus pneumoniae D39

47.549

97.608

0.464
  cinA Streptococcus mutans UA159

46.154

96.411

0.445
  cinA Streptococcus suis isolate S10

40.526

90.909

0.368