Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH37_RS08745 Genome accession   NZ_CP126112
Coordinates   1807932..1809164 (+) Length   410 a.a.
NCBI ID   WP_283901884.1    Uniprot ID   -
Organism   Peribacillus simplex strain WH6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1802932..1814164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH37_RS08720 (QNH37_08720) - 1804145..1804870 (+) 726 WP_283901882.1 SDR family oxidoreductase -
  QNH37_RS08725 (QNH37_08725) - 1804950..1805207 (+) 258 WP_076366409.1 DUF3243 domain-containing protein -
  QNH37_RS08730 (QNH37_08730) - 1805451..1806242 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  QNH37_RS08735 (QNH37_08735) - 1806251..1807159 (+) 909 WP_349632635.1 RodZ family helix-turn-helix domain-containing protein -
  QNH37_RS08740 (QNH37_08740) pgsA 1807325..1807909 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH37_RS08745 (QNH37_08745) cinA 1807932..1809164 (+) 1233 WP_283901884.1 competence/damage-inducible protein A Machinery gene
  QNH37_RS08750 (QNH37_08750) recA 1809513..1810559 (+) 1047 WP_283901885.1 recombinase RecA Machinery gene
  QNH37_RS08755 (QNH37_08755) rny 1810913..1812472 (+) 1560 WP_283901886.1 ribonuclease Y -
  QNH37_RS08760 (QNH37_08760) - 1812625..1813422 (+) 798 WP_076366401.1 TIGR00282 family metallophosphoesterase -
  QNH37_RS08765 (QNH37_08765) spoVS 1813597..1813857 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44997.26 Da        Isoelectric Point: 4.9671

>NTDB_id=836483 QNH37_RS08745 WP_283901884.1 1807932..1809164(+) (cinA) [Peribacillus simplex strain WH6]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKSNLLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=836483 QNH37_RS08745 WP_283901884.1 1807932..1809164(+) (cinA) [Peribacillus simplex strain WH6]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGACAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGTTTACAACAAGCTATAG
AAATCGCTGAATCAAGGGCGAACTTGATTGTCTTTACCGGTGGACTTGGTCCTACTAAAGATGATTTGACGAAAGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGTCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGGATGG
CACCGGGAATGGTCTTGTCCAAATCTGGGATTACATATATGCTTCTACCTGGTCCGCCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGAATCGATTCCAAGGTTCTTCGGTTCTATGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATTGCCCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAAGACTCATCTAAAGAAAAATGCGAAGAGCTAATATTGGAAGCGGAA
AAAGAAATTCTTAGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCGATTGCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTCAAAGGCGGAATTGTCTGCTATACGAATGATGCGAAGTCTAATCTCCTCGGCGTCAGTGATGAT
ACCATTTCCGAGTATGGGGTGGTCAGCGGTGAGTGTGCTATGGAAATGGCCTCTAATGTCCGGAGCAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGCGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGGAACACTCATTTCAAGGAGTTGAATCTTTCAGGCAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCACTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.333

99.512

0.58
  cinA Streptococcus pneumoniae TIGR4

45.238

100

0.463
  cinA Streptococcus mitis SK321

45

100

0.461
  cinA Streptococcus pneumoniae Rx1

44.762

100

0.459
  cinA Streptococcus pneumoniae R6

44.762

100

0.459
  cinA Streptococcus pneumoniae D39

44.524

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38