Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SJJ41_RS29285 Genome accession   NZ_CP141102
Coordinates   6388946..6389590 (+) Length   214 a.a.
NCBI ID   WP_099175983.1    Uniprot ID   A0ABU7ZY77
Organism   Streptomyces sp. S584     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6383946..6394590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS29265 - 6384829..6385554 (-) 726 WP_322985814.1 transglycosylase SLT domain-containing protein -
  SJJ41_RS29270 - 6385864..6386916 (-) 1053 WP_322985815.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  SJJ41_RS29275 - 6386913..6387626 (-) 714 WP_322986881.1 SDR family NAD(P)-dependent oxidoreductase -
  SJJ41_RS29280 - 6387808..6388953 (+) 1146 WP_147985466.1 GAF domain-containing sensor histidine kinase -
  SJJ41_RS29285 vraR 6388946..6389590 (+) 645 WP_099175983.1 response regulator Regulator
  SJJ41_RS29290 - 6389752..6390003 (+) 252 WP_124277157.1 chaplin family protein -
  SJJ41_RS29295 - 6390120..6390899 (-) 780 WP_322985816.1 hypothetical protein -
  SJJ41_RS29300 - 6391020..6391820 (+) 801 WP_099175980.1 ABC transporter ATP-binding protein -
  SJJ41_RS29305 - 6391886..6392314 (+) 429 WP_099175979.1 NfeD family protein -
  SJJ41_RS29310 - 6392451..6393380 (+) 930 WP_099175978.1 SPFH domain-containing protein -
  SJJ41_RS29315 - 6393465..6394232 (+) 768 WP_322985817.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23100.35 Da        Isoelectric Point: 5.3797

>NTDB_id=836347 SJJ41_RS29285 WP_099175983.1 6388946..6389590(+) (vraR) [Streptomyces sp. S584]
MADKIIKVLLVDDHQVVRRGLRTFLEIQDDIEVVGEASDGAEGVARTEELRPDVVLMDIKMPGTDGIEALRRLRELENPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDTGNGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGAAG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=836347 SJJ41_RS29285 WP_099175983.1 6388946..6389590(+) (vraR) [Streptomyces sp. S584]
GTGGCTGACAAGATCATCAAGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGGGGACTGCGTACGTTCCTGGAGAT
CCAGGACGACATAGAGGTCGTCGGGGAGGCGTCGGACGGGGCCGAGGGCGTCGCCAGGACCGAGGAGCTGCGGCCCGACG
TGGTCCTGATGGACATCAAGATGCCCGGCACGGACGGTATAGAGGCGCTCCGCAGGCTCAGGGAGCTGGAGAACCCCGCC
AAGGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTGCCCGCCCTGCGGGCGGGAGCCTCGGGTTACGTGTA
CAAGGACGTCGACCCGGACGCCCTGGCCGGCGCCATCCGCTCGGTCCACGCGGGCCATGTCCTGCTCCAGCCCGAGGTCG
CCGGCGCGCTGCTGGCCCAGGACGACACGGGCAACGGCACGGGGCGGGGGAGCACCCTGACCGAGCGGGAGAGGGAGGTG
CTCGGTCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGGGCGCTTGTCCTGTCGGAGAAGACGGTGAAGACCCA
CGTCTCGAACATCCTGATGAAGCTCGATCTGTCGGACAGGACCCAGGCCGCGCTGTGGGCGGTCCGGCACGGGGCGGCCG
GCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.146

96.262

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.407