Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH43_RS08355 Genome accession   NZ_CP126106
Coordinates   1720199..1721431 (+) Length   410 a.a.
NCBI ID   WP_283917440.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1715199..1726431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS08330 (QNH43_08330) - 1716415..1717140 (+) 726 WP_192204078.1 SDR family oxidoreductase -
  QNH43_RS08335 (QNH43_08335) - 1717220..1717477 (+) 258 WP_283917438.1 DUF3243 domain-containing protein -
  QNH43_RS08340 (QNH43_08340) - 1717719..1718510 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  QNH43_RS08345 (QNH43_08345) - 1718519..1719427 (+) 909 WP_349654808.1 RodZ family helix-turn-helix domain-containing protein -
  QNH43_RS08350 (QNH43_08350) pgsA 1719592..1720176 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH43_RS08355 (QNH43_08355) cinA 1720199..1721431 (+) 1233 WP_283917440.1 competence/damage-inducible protein A Machinery gene
  QNH43_RS08360 (QNH43_08360) recA 1721780..1722826 (+) 1047 WP_260284301.1 recombinase RecA Machinery gene
  QNH43_RS08365 (QNH43_08365) rny 1723180..1724739 (+) 1560 WP_063231807.1 ribonuclease Y -
  QNH43_RS08370 (QNH43_08370) - 1724891..1725688 (+) 798 WP_076366401.1 TIGR00282 family metallophosphoesterase -
  QNH43_RS08375 (QNH43_08375) spoVS 1725863..1726123 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44905.25 Da        Isoelectric Point: 5.2404

>NTDB_id=836230 QNH43_RS08355 WP_283917440.1 1720199..1721431(+) (cinA) [Peribacillus simplex strain RZ14]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGASKEKCEELILEAE
KEILGRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKSNVLGVSDD
TISKYGVVSGECAMEMASNVRNKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=836230 QNH43_RS08355 WP_283917440.1 1720199..1721431(+) (cinA) [Peribacillus simplex strain RZ14]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGGCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGTTTACAACAAGCCATAG
AAATCGCTGAATCAAGGGCGAACTTGATTGTCTTTACCGGTGGACTTGGTCCTACCAAAGATGATTTGACGAAAGAAACG
ATTGCCCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGTCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGGATGG
CACCGGGAATGGTCTTGTCCAAATCTGGGATTACATATATGCTTCTACCTGGTCCGCCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAGCTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATTGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAGGGCGCATCTAAAGAAAAATGCGAAGAGCTTATTTTGGAAGCTGAA
AAAGAAATTCTTGGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCGATTGCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTCAAAGGCGGAATTGTCTGCTATACGAATGATGCGAAGTCAAATGTCCTCGGCGTCAGTGATGAT
ACCATATCAAAGTATGGGGTGGTCAGCGGTGAGTGTGCTATGGAAATGGCCTCTAATGTCCGGAACAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGCGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGTACTGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCAGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGCCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus mitis SK321

44.524

100

0.456
  cinA Streptococcus pneumoniae TIGR4

44.524

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.286

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.048

100

0.451
  cinA Streptococcus pneumoniae R6

44.048

100

0.451
  cinA Streptococcus pneumoniae D39

43.81

100

0.449
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378