Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH45_RS19150 Genome accession   NZ_CP126099
Coordinates   3696340..3697578 (-) Length   412 a.a.
NCBI ID   WP_283882276.1    Uniprot ID   A0AA95LPG0
Organism   Bacillus wiedmannii strain LN15     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3691340..3702578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS19130 (QNH45_19130) rny 3692133..3693695 (-) 1563 WP_000099774.1 ribonuclease Y -
  QNH45_RS19135 (QNH45_19135) - 3694176..3694598 (-) 423 Protein_3704 recombinase RecA -
  QNH45_RS19140 (QNH45_19140) - 3694867..3695490 (-) 624 WP_283882275.1 topoisomerase I -
  QNH45_RS19145 (QNH45_19145) recA 3695588..3696196 (-) 609 Protein_3706 recombinase RecA -
  QNH45_RS19150 (QNH45_19150) cinA 3696340..3697578 (-) 1239 WP_283882276.1 competence/damage-inducible protein CinA Machinery gene
  QNH45_RS19155 (QNH45_19155) pgsA 3697599..3698177 (-) 579 WP_283882277.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH45_RS19160 (QNH45_19160) - 3698241..3699152 (-) 912 WP_283882278.1 helix-turn-helix domain-containing protein -
  QNH45_RS19165 (QNH45_19165) - 3699174..3699959 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  QNH45_RS19170 (QNH45_19170) - 3700100..3700348 (-) 249 WP_000114455.1 DUF3243 domain-containing protein -
  QNH45_RS19175 (QNH45_19175) - 3700424..3701137 (-) 714 WP_283882282.1 SDR family oxidoreductase -
  QNH45_RS19180 (QNH45_19180) - 3701241..3702527 (-) 1287 WP_000411958.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45289.57 Da        Isoelectric Point: 5.2140

>NTDB_id=835830 QNH45_RS19150 WP_283882276.1 3696340..3697578(-) (cinA) [Bacillus wiedmannii strain LN15]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADILIFTGGLGPTKDDLTKET
ISSSLGEELVYDEKALASISEYFRRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNEKVYILLPGPPKEMKPMY
ISYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAAKLIQHMED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSAVFKGGVICYHNDVKQHVLHVPAEV
LSTDGAVSKECARYLAENVKGLLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=835830 QNH45_RS19150 WP_283882276.1 3696340..3697578(-) (cinA) [Bacillus wiedmannii strain LN15]
ATGAATGCTGAAATTATTGCGGTTGGAACCGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAATTAGCTTCAATCGGAATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAGCGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCTGACATACTTATTTTCACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATATCTTCTAGTTTGGGTGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCGATAAGCGAGTACTTTAGGCGTACAGG
TCGCGAGTTCACAGAGAATAATAAAAAGCAAGCGCTCGTTTTGAATGGAGCAACTGTATTTGCGAATGATCACGGCATGG
CACCTGGTATGGGGCTAAATAAGAACGAGAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCGATGTAT
ATAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTTTTCGGGAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCCCTTGCGAATG
ATGGAGAAGTGACACTACGTTTAACTGCCAAACATCAAAATGCTGATGAAGCGGCGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGATCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCTTGTGCAGAAAGTTTAACCGGTGGTCTCTTCGGCAATCAAGTAACAGAAAGTGCTGGTG
TGTCTGCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGCGGAAGTG
TTGTCTACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGGCTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTCGTTGGATTGGCGA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGGGAACGTTCGGTGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.01

100

0.58
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

40.741

91.748

0.374