Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH50_RS08550 Genome accession   NZ_CP126092
Coordinates   1748548..1749780 (+) Length   410 a.a.
NCBI ID   WP_230303234.1    Uniprot ID   A0A9W4L7U9
Organism   Peribacillus simplex strain D9_B_73     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1743548..1754780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS08525 (QNH50_08525) - 1744762..1745487 (+) 726 WP_098370969.1 SDR family oxidoreductase -
  QNH50_RS08530 (QNH50_08530) - 1745567..1745824 (+) 258 WP_230303237.1 DUF3243 domain-containing protein -
  QNH50_RS08535 (QNH50_08535) - 1746068..1746859 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  QNH50_RS08540 (QNH50_08540) - 1746868..1747776 (+) 909 WP_230303236.1 RodZ domain-containing protein -
  QNH50_RS08545 (QNH50_08545) pgsA 1747941..1748525 (+) 585 WP_230303235.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH50_RS08550 (QNH50_08550) cinA 1748548..1749780 (+) 1233 WP_230303234.1 competence/damage-inducible protein A Machinery gene
  QNH50_RS08555 (QNH50_08555) recA 1750128..1751174 (+) 1047 WP_283932793.1 recombinase RecA Machinery gene
  QNH50_RS08560 (QNH50_08560) rny 1751527..1753086 (+) 1560 WP_063231807.1 ribonuclease Y -
  QNH50_RS08565 (QNH50_08565) - 1753239..1754036 (+) 798 WP_230303233.1 TIGR00282 family metallophosphoesterase -
  QNH50_RS08570 (QNH50_08570) spoVS 1754211..1754471 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45009.31 Da        Isoelectric Point: 4.9671

>NTDB_id=835411 QNH50_RS08550 WP_230303234.1 1748548..1749780(+) (cinA) [Peribacillus simplex strain D9_B_73]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLVNDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKDSSKEKCEELILEAE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGIVCYTNDAKSNVLGISDD
TISEFGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=835411 QNH50_RS08550 WP_230303234.1 1748548..1749780(+) (cinA) [Peribacillus simplex strain D9_B_73]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGACAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGCCGTTTACAACAAGCTATAG
AAATCGCTGAATCAAGGGCGAACTTGATTGTCTTTACAGGTGGACTTGGTCCTACCAAAGATGATTTGACGAAAGAAACG
ATTGCTCGCCATATAGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGTCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGTAAACGATCATGGGATGG
CACCGGGAATGGTCTTGTCCAAATCTGGGATTACATATATGCTTCTACCTGGTCCGCCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAGGATCTCCTTGTCAATCAAACGAATCCGACAATTGCCCCGCTTGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCTAAAGACTCATCTAAAGAAAAATGCGAAGAGCTTATATTGGAAGCGGAA
AAAGAAATTCTTAGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATTGCGGCAGCTGAAAGCTTGACCGGAGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTCAAAGGCGGAATTGTCTGCTATACGAATGATGCGAAGTCTAATGTCCTCGGCATCAGTGATGAT
ACCATATCCGAGTTTGGGGTGGTCAGCGGTGAGTGTGCTATGGAAATGGCCTCTAATGTCCGGAGCAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGCGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCAGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.333

99.512

0.58
  cinA Streptococcus pneumoniae TIGR4

45.476

100

0.466
  cinA Streptococcus mitis SK321

45.238

100

0.463
  cinA Streptococcus pneumoniae Rx1

45

100

0.461
  cinA Streptococcus pneumoniae R6

45

100

0.461
  cinA Streptococcus pneumoniae D39

44.762

100

0.459
  cinA Streptococcus mitis NCTC 12261

44.762

100

0.459
  cinA Streptococcus mutans UA159

43.564

98.537

0.429
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38