Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   SPG78_RS05760 Genome accession   NZ_CP140483
Coordinates   1208515..1209564 (+) Length   349 a.a.
NCBI ID   WP_000115538.1    Uniprot ID   -
Organism   Helicobacter pylori strain 51N     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1203515..1214564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG78_RS05740 - 1203662..1204405 (+) 744 WP_014537390.1 carbonic anhydrase -
  SPG78_RS05745 - 1204641..1205684 (-) 1044 WP_041202090.1 DUF874 family protein -
  SPG78_RS05750 asd 1206098..1207138 (-) 1041 WP_000860914.1 aspartate-semialdehyde dehydrogenase -
  SPG78_RS05755 hisS 1207125..1208453 (-) 1329 WP_375022523.1 histidine--tRNA ligase -
  SPG78_RS05760 waaF 1208515..1209564 (+) 1050 WP_000115538.1 lipopolysaccharide heptosyltransferase II Regulator
  SPG78_RS05765 - 1209754..1210080 (-) 327 WP_000744163.1 hypothetical protein -
  SPG78_RS05770 fusA 1210621..1212699 (-) 2079 WP_000101843.1 elongation factor G -
  SPG78_RS05775 rpsG 1212711..1213178 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  SPG78_RS05780 rpsL 1213194..1213601 (-) 408 WP_001142325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39587.55 Da        Isoelectric Point: 9.8130

>NTDB_id=835063 SPG78_RS05760 WP_000115538.1 1208515..1209564(+) (waaF) [Helicobacter pylori strain 51N]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNVRFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIMAAPKDYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=835063 SPG78_RS05760 WP_000115538.1 1208515..1209564(+) (waaF) [Helicobacter pylori strain 51N]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGTGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCCAAAGACT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTACTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361