Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH40_RS08460 Genome accession   NZ_CP126086
Coordinates   1671852..1673102 (+) Length   416 a.a.
NCBI ID   WP_283931334.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1666852..1678102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS08435 (QNH40_08435) - 1668254..1668982 (+) 729 WP_250026497.1 SDR family oxidoreductase -
  QNH40_RS08440 (QNH40_08440) - 1669056..1669313 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  QNH40_RS08445 (QNH40_08445) - 1669454..1670245 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  QNH40_RS08450 (QNH40_08450) - 1670269..1671180 (+) 912 WP_008344690.1 helix-turn-helix domain-containing protein -
  QNH40_RS08455 (QNH40_08455) pgsA 1671254..1671835 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH40_RS08460 (QNH40_08460) cinA 1671852..1673102 (+) 1251 WP_283931334.1 competence/damage-inducible protein A Machinery gene
  QNH40_RS08465 (QNH40_08465) recA 1673280..1674323 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  QNH40_RS08470 (QNH40_08470) rny 1674624..1676186 (+) 1563 WP_003211958.1 ribonuclease Y -
  QNH40_RS08475 (QNH40_08475) - 1676276..1677070 (+) 795 WP_008344680.1 TIGR00282 family metallophosphoesterase -
  QNH40_RS08480 (QNH40_08480) spoVS 1677272..1677532 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45658.83 Da        Isoelectric Point: 4.8653

>NTDB_id=835063 QNH40_RS08460 WP_283931334.1 1671852..1673102(+) (cinA) [Bacillus altitudinis strain CES-OCA-19]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLFSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQADVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=835063 QNH40_RS08460 WP_283931334.1 1671852..1673102(+) (cinA) [Bacillus altitudinis strain CES-OCA-19]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCACCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGTTCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTTGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTGGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGTAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTTTTCTCATGGTGCTGTTAGCAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGCCAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGGCAGACGTGTTTGAATGGATGTTTACTGGCAGCCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

47.368

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

47.912

97.837

0.469
  cinA Streptococcus suis isolate S10

41.927

92.308

0.387