Detailed information NTG0834781

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: QNH35_RS17420
• Genome accession: NZ_CP126081
• Coordinates: 3344668..3345354 (-)
• Length: 228 a.a.
• NCBI ID: WP_283923976.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain B2_10
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3339668..3350354

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH35_RS17385 (QNH35_17385)	fliW	3339801..3340235 (-)	435	WP_044139341.1	flagellar assembly protein FliW	-
QNH35_RS17390 (QNH35_17390)	-	3340264..3340842 (-)	579	WP_003213106.1	DUF6470 family protein	-
QNH35_RS17395 (QNH35_17395)	flgL	3340891..3341802 (-)	912	WP_044139340.1	flagellar hook-associated protein FlgL	-
QNH35_RS17400 (QNH35_17400)	flgK	3341812..3343332 (-)	1521	WP_283923975.1	flagellar hook-associated protein FlgK	-
QNH35_RS17405 (QNH35_17405)	-	3343348..3343830 (-)	483	WP_003213076.1	flagellar protein FlgN	-
QNH35_RS17410 (QNH35_17410)	flgM	3343849..3344112 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
QNH35_RS17415 (QNH35_17415)	-	3344192..3344611 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
QNH35_RS17420 (QNH35_17420)	comFC	3344668..3345354 (-)	687	WP_283923976.1	ComF family protein	Machinery gene
QNH35_RS17425 (QNH35_17425)	-	3345351..3345644 (-)	294	WP_106066158.1	late competence development ComFB family protein	-
QNH35_RS17430 (QNH35_17430)	comFA	3345711..3347090 (-)	1380	WP_283923977.1	DEAD/DEAH box helicase	Machinery gene
QNH35_RS17435 (QNH35_17435)	-	3347210..3348052 (-)	843	WP_283923978.1	DegV family protein	-
QNH35_RS17440 (QNH35_17440)	degU	3348270..3348959 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
QNH35_RS17445 (QNH35_17445)	degS	3349024..3350199 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25902.32 Da
• Isoelectric Point: 9.8035

>NTDB_id=834781 QNH35_RS17420 WP_283923976.1 3344668..3345354(-) (comFC) [Bacillus pumilus strain B2_10]
MICLICEGHFVASFTWKSLLLLNDDRLCIACKHHLEKIQGPICPACGRAQSNDQLCQDCSRWKERTVSTTLLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGEPILQPLVKIH
QTKQSKKKKNERLDQKGMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=834781 QNH35_RS17420 WP_283923976.1 3344668..3345354(-) (comFC) [Bacillus pumilus strain B2_10]
TTGATCTGCCTCATTTGTGAGGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAAGGCCCGATTTGTCCAGCCTGCGGGAGAGCACAGTCGAACGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCACTGTTTCTACTACATTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCTTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGACTAA
AGGAAAGAGGGTTTAATCAGTCCGTCATACTTGCTTCCTTGATTGGTGAGCCGATCCTTCAGCCACTTGTGAAAATACAT
CAAACCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAACAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (137-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	51.304	100	0.518
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395