Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QNH35_RS17440 Genome accession   NZ_CP126081
Coordinates   3348270..3348959 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain B2_10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3343270..3353959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS17405 (QNH35_17405) - 3343348..3343830 (-) 483 WP_003213076.1 flagellar protein FlgN -
  QNH35_RS17410 (QNH35_17410) flgM 3343849..3344112 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH35_RS17415 (QNH35_17415) - 3344192..3344611 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  QNH35_RS17420 (QNH35_17420) comFC 3344668..3345354 (-) 687 WP_283923976.1 ComF family protein Machinery gene
  QNH35_RS17425 (QNH35_17425) - 3345351..3345644 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  QNH35_RS17430 (QNH35_17430) comFA 3345711..3347090 (-) 1380 WP_283923977.1 DEAD/DEAH box helicase Machinery gene
  QNH35_RS17435 (QNH35_17435) - 3347210..3348052 (-) 843 WP_283923978.1 DegV family protein -
  QNH35_RS17440 (QNH35_17440) degU 3348270..3348959 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QNH35_RS17445 (QNH35_17445) degS 3349024..3350199 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QNH35_RS17450 (QNH35_17450) - 3350421..3351089 (+) 669 WP_003212936.1 YigZ family protein -
  QNH35_RS17455 (QNH35_17455) - 3351074..3352162 (+) 1089 WP_217012105.1 LCP family protein -
  QNH35_RS17460 (QNH35_17460) - 3352198..3353265 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=834783 QNH35_RS17440 WP_008348273.1 3348270..3348959(-) (degU) [Bacillus pumilus strain B2_10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=834783 QNH35_RS17440 WP_008348273.1 3348270..3348959(-) (degU) [Bacillus pumilus strain B2_10]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTTGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996