Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   U2S93_RS30170 Genome accession   NZ_CP140431
Coordinates   6361409..6361933 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2023CK-01249     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6356409..6366933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S93_RS30155 (U2S93_30155) aroB 6357525..6358631 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  U2S93_RS30160 (U2S93_30160) aroK 6358681..6359199 (-) 519 WP_003095833.1 shikimate kinase AroK -
  U2S93_RS30165 (U2S93_30165) pilQ 6359211..6361355 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  U2S93_RS30170 (U2S93_30170) comL/pilP 6361409..6361933 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  U2S93_RS30175 (U2S93_30175) pilO 6361930..6362553 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  U2S93_RS30180 (U2S93_30180) pilN 6362550..6363146 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  U2S93_RS30185 (U2S93_30185) pilM 6363146..6364210 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  U2S93_RS30190 (U2S93_30190) - 6364395..6366866 (+) 2472 WP_019484455.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=834784 U2S93_RS30170 WP_003095836.1 6361409..6361933(-) (comL/pilP) [Pseudomonas aeruginosa strain 2023CK-01249]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=834784 U2S93_RS30170 WP_003095836.1 6361409..6361933(-) (comL/pilP) [Pseudomonas aeruginosa strain 2023CK-01249]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362