Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QNH35_RS17430 Genome accession   NZ_CP126081
Coordinates   3345711..3347090 (-) Length   459 a.a.
NCBI ID   WP_283923977.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3340711..3352090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS17395 (QNH35_17395) flgL 3340891..3341802 (-) 912 WP_044139340.1 flagellar hook-associated protein FlgL -
  QNH35_RS17400 (QNH35_17400) flgK 3341812..3343332 (-) 1521 WP_283923975.1 flagellar hook-associated protein FlgK -
  QNH35_RS17405 (QNH35_17405) - 3343348..3343830 (-) 483 WP_003213076.1 flagellar protein FlgN -
  QNH35_RS17410 (QNH35_17410) flgM 3343849..3344112 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH35_RS17415 (QNH35_17415) - 3344192..3344611 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  QNH35_RS17420 (QNH35_17420) comFC 3344668..3345354 (-) 687 WP_283923976.1 ComF family protein Machinery gene
  QNH35_RS17425 (QNH35_17425) - 3345351..3345644 (-) 294 WP_106066158.1 late competence development ComFB family protein -
  QNH35_RS17430 (QNH35_17430) comFA 3345711..3347090 (-) 1380 WP_283923977.1 DEAD/DEAH box helicase Machinery gene
  QNH35_RS17435 (QNH35_17435) - 3347210..3348052 (-) 843 WP_283923978.1 DegV family protein -
  QNH35_RS17440 (QNH35_17440) degU 3348270..3348959 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QNH35_RS17445 (QNH35_17445) degS 3349024..3350199 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QNH35_RS17450 (QNH35_17450) - 3350421..3351089 (+) 669 WP_003212936.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52469.37 Da        Isoelectric Point: 10.0306

>NTDB_id=834782 QNH35_RS17430 WP_283923977.1 3345711..3347090(-) (comFA) [Bacillus pumilus strain B2_10]
MNMDKAMELGQYLQSRHLLTAETRCSQSDLDWLEEKGLVIRTPSIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEEACHSELTWQGDLSKGQKRASEKLIEAIKHKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAVKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=834782 QNH35_RS17430 WP_283923977.1 3345711..3347090(-) (comFA) [Bacillus pumilus strain B2_10]
TTGAACATGGACAAAGCAATGGAACTAGGGCAGTATCTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGTTGGAGGAGAAAGGGTTAGTTATCCGAACACCTTCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTGTCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAGCATG
TCACTCGGAATTAACATGGCAGGGAGACCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAAATTGATAGAAGCGATAAAAC
ACAAATCTGATCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTACTTGAACTAGAGCCGCGGCTTAAAAAAGCTTT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGTTAGTAATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATAGATGAAGTCGATGCCTTCCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCGTAAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCGGTCCCAT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAATCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATTACAAAAAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCAATTCAGAGATGACAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCCGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(117-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.725

99.129

0.542