Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QNH35_RS09130 Genome accession   NZ_CP126081
Coordinates   1799622..1800872 (+) Length   416 a.a.
NCBI ID   WP_044142093.1    Uniprot ID   A0AB34QQP9
Organism   Bacillus pumilus strain B2_10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1794622..1805872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS09105 (QNH35_09105) - 1796031..1796759 (+) 729 WP_283924496.1 SDR family oxidoreductase -
  QNH35_RS09110 (QNH35_09110) - 1796833..1797090 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  QNH35_RS09115 (QNH35_09115) - 1797222..1798013 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  QNH35_RS09120 (QNH35_09120) - 1798037..1798948 (+) 912 WP_003212257.1 helix-turn-helix domain-containing protein -
  QNH35_RS09125 (QNH35_09125) pgsA 1799024..1799605 (+) 582 WP_044141864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QNH35_RS09130 (QNH35_09130) cinA 1799622..1800872 (+) 1251 WP_044142093.1 competence/damage-inducible protein A Machinery gene
  QNH35_RS09135 (QNH35_09135) recA 1801050..1802087 (+) 1038 WP_044141863.1 recombinase RecA Machinery gene
  QNH35_RS09140 (QNH35_09140) rny 1802394..1803956 (+) 1563 WP_003211958.1 ribonuclease Y -
  QNH35_RS09145 (QNH35_09145) - 1804045..1804839 (+) 795 WP_003212177.1 TIGR00282 family metallophosphoesterase -
  QNH35_RS09150 (QNH35_09150) spoVS 1805041..1805301 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45701.78 Da        Isoelectric Point: 4.9261

>NTDB_id=834757 QNH35_RS09130 WP_044142093.1 1799622..1800872(+) (cinA) [Bacillus pumilus strain B2_10]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLDLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=834757 QNH35_RS09130 WP_044142093.1 1799622..1800872(+) (cinA) [Bacillus pumilus strain B2_10]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTGTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATCGCGAGTACACTTGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAGACGATACGTTTTATATGCTGCTTCCTGGACCACCAAGTGAACTG
CATCCAATGTTTGAGAACGAGGCGAAGCCGCTGATATCTGAGAAACTGGACTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTTTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACGGAAGCGAAAATTTTAGCGCGTGTAGGAGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
TTCCAAGGCCCTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGAATGTTTTCTGAATGGCTGA
CAGACCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACATTGTCTTCTCATGGTGCTGTTAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCGGGCCCTGATACCCATGAGGGACAGCCTGTCGGAAAAGTGT
TTATCGGGCTATCTACGAAAGACCACACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGTATTCGAAAGCGC
GCTGTGAAATACGGACTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.976

99.76

0.738
  cinA Streptococcus mutans UA159

48.558

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397