Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMY49_RS14465 Genome accession   NZ_CP125875
Coordinates   3058554..3059663 (-) Length   369 a.a.
NCBI ID   WP_038897980.1    Uniprot ID   -
Organism   Vibrio harveyi strain SB1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3053554..3064663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY49_RS14435 (QMY49_14435) hemF 3054083..3055000 (-) 918 WP_005450967.1 oxygen-dependent coproporphyrinogen oxidase -
  QMY49_RS14440 (QMY49_14440) - 3055035..3055592 (-) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  QMY49_RS14445 (QMY49_14445) purE 3055792..3056277 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QMY49_RS14450 (QMY49_14450) - 3056282..3057415 (+) 1134 WP_283312134.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QMY49_RS14455 (QMY49_14455) - 3057479..3058048 (-) 570 WP_005450974.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QMY49_RS14460 (QMY49_14460) - 3058072..3058551 (-) 480 WP_005429833.1 DUF494 family protein -
  QMY49_RS14465 (QMY49_14465) dprA 3058554..3059663 (-) 1110 WP_038897980.1 DNA-processing protein DprA Machinery gene
  QMY49_RS14470 (QMY49_14470) - 3059647..3060741 (-) 1095 WP_050935970.1 LysM peptidoglycan-binding domain-containing protein -
  QMY49_RS14475 (QMY49_14475) def 3060880..3061398 (+) 519 WP_005450979.1 peptide deformylase -
  QMY49_RS14480 (QMY49_14480) fmt 3061432..3062379 (+) 948 WP_283312140.1 methionyl-tRNA formyltransferase -
  QMY49_RS14485 (QMY49_14485) rsmB 3062461..3063744 (+) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39751.44 Da        Isoelectric Point: 6.0412

>NTDB_id=833247 QMY49_RS14465 WP_038897980.1 3058554..3059663(-) (dprA) [Vibrio harveyi strain SB1]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=833247 QMY49_RS14465 WP_038897980.1 3058554..3059663(-) (dprA) [Vibrio harveyi strain SB1]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGATGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.954

100

0.93
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.933

100

0.477
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371