Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   I3F59_RS08670 Genome accession   NZ_CP140097
Coordinates   1956160..1956834 (-) Length   224 a.a.
NCBI ID   WP_275675214.1    Uniprot ID   A0ABT6HT75
Organism   Streptomyces sp. MUM 178J     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1951160..1961834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS08660 (I3F59_008660) - 1953724..1954656 (+) 933 WP_240138659.1 hypothetical protein -
  I3F59_RS08665 (I3F59_008665) clpX 1954731..1956014 (-) 1284 WP_240138660.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  I3F59_RS08670 (I3F59_008670) clpP 1956160..1956834 (-) 675 WP_275675214.1 ATP-dependent Clp protease proteolytic subunit Regulator
  I3F59_RS08675 (I3F59_008675) - 1956884..1957489 (-) 606 WP_240138699.1 ATP-dependent Clp protease proteolytic subunit -
  I3F59_RS08680 (I3F59_008680) tig 1957782..1959212 (-) 1431 WP_240138662.1 trigger factor -
  I3F59_RS08695 (I3F59_008695) - 1959739..1959933 (-) 195 WP_240138663.1 hypothetical protein -
  I3F59_RS08700 (I3F59_008700) - 1960106..1961251 (-) 1146 WP_240138664.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24569.90 Da        Isoelectric Point: 4.6200

>NTDB_id=833046 I3F59_RS08670 WP_275675214.1 1956160..1956834(-) (clpP) [Streptomyces sp. MUM 178J]
MVNTHMTDFSASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLSDLE
IAANEILRMRTQLEEMLAKHSSTALEKIRDDIERDKILTAEDALEYGLIDQIVSTRKSAAAAAA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=833046 I3F59_RS08670 WP_275675214.1 1956160..1956834(-) (clpP) [Streptomyces sp. MUM 178J]
ATGGTGAACACCCACATGACTGACTTCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTATGTCGTCCC
GCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCCAAGCTCTTCGAGGAGCGCGTGATCTTCC
TCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGC
GACATCTCCGTCTACATCAACAGCCCCGGCGGCTCGTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTTCGTGAA
GCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCCGCCGGCACGCCCGGCAAGC
GCATGGCCCTGCCGCACGCACGCGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCCGACCTGGAG
ATCGCCGCCAACGAGATCCTGCGGATGCGCACCCAGCTCGAGGAGATGCTGGCCAAGCACTCCTCCACCGCGCTGGAGAA
GATCCGCGACGACATCGAGCGTGACAAGATCCTCACCGCTGAGGACGCGCTCGAGTACGGCCTGATCGACCAGATCGTCT
CCACCCGCAAGAGCGCGGCGGCAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.821

0.433
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

83.929

0.411
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

85.268

0.388
  clpP Streptococcus pneumoniae Rx1

44.56

86.161

0.384
  clpP Streptococcus pneumoniae D39

44.56

86.161

0.384
  clpP Streptococcus pneumoniae R6

44.56

86.161

0.384
  clpP Streptococcus pneumoniae TIGR4

44.56

86.161

0.384
  clpP Streptococcus thermophilus LMG 18311

44.33

86.607

0.384
  clpP Streptococcus thermophilus LMD-9

44.33

86.607

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

85.268

0.384
  clpP Streptococcus pyogenes JRS4

43.814

86.607

0.379
  clpP Streptococcus pyogenes MGAS315

43.814

86.607

0.379
  clpP Streptococcus mutans UA159

43.814

86.607

0.379