Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QMA40_RS18700 Genome accession   NZ_CP125661
Coordinates   3655375..3656613 (-) Length   412 a.a.
NCBI ID   WP_410491251.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain BV5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3650375..3661613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA40_RS18675 (QMA40_18615) spoVS 3650459..3650719 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  QMA40_RS18680 (QMA40_18620) - 3650869..3651663 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  QMA40_RS18685 (QMA40_18625) rny 3651826..3653391 (-) 1566 WP_000099770.1 ribonuclease Y -
  QMA40_RS18690 (QMA40_18630) - 3653872..3654294 (-) 423 Protein_3618 DNA recombination/repair protein RecA -
  QMA40_RS18695 (QMA40_18635) recA 3654622..3655230 (-) 609 Protein_3619 recombinase RecA -
  QMA40_RS18700 (QMA40_18640) cinA 3655375..3656613 (-) 1239 WP_410491251.1 competence/damage-inducible protein A Machinery gene
  QMA40_RS18705 (QMA40_18645) pgsA 3656634..3657212 (-) 579 WP_001052970.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMA40_RS18710 (QMA40_18650) - 3657277..3658188 (-) 912 WP_000137476.1 helix-turn-helix domain-containing protein -
  QMA40_RS18715 (QMA40_18655) - 3658210..3658995 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  QMA40_RS18720 (QMA40_18660) - 3659134..3659382 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  QMA40_RS18725 (QMA40_18665) ymfI 3659458..3660171 (-) 714 WP_000759606.1 elongation factor P 5-aminopentanone reductase -
  QMA40_RS18730 (QMA40_18670) yfmH 3660272..3661558 (-) 1287 WP_000411984.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45521.88 Da        Isoelectric Point: 5.3526

>NTDB_id=832303 QMA40_RS18700 WP_410491251.1 3655375..3656613(-) (cinA) [Bacillus thuringiensis strain BV5]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALVLISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKEEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=832303 QMA40_RS18700 WP_410491251.1 3655375..3656613(-) (cinA) [Bacillus thuringiensis strain BV5]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGTCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCAGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAATTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAGCAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGAAGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.495

100

0.585
  cinA Streptococcus mitis SK321

46.778

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.053

91.505

0.367