Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U0532_RS04310 Genome accession   NZ_CP139808
Coordinates   859529..860158 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain FLI21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 854529..865158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0532_RS04295 (U0532_04295) helD 854771..856825 (-) 2055 WP_206286787.1 DNA helicase IV -
  U0532_RS04300 (U0532_04300) yccF 856948..857394 (+) 447 WP_001261235.1 YccF domain-containing protein -
  U0532_RS04305 (U0532_04305) yccS 857404..859566 (+) 2163 WP_000875061.1 YccS family putative transporter -
  U0532_RS04310 (U0532_04310) sxy/tfoX 859529..860158 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U0532_RS04315 (U0532_04315) sulA 860377..860886 (+) 510 WP_241225142.1 SOS-induced cell division inhibitor SulA -
  U0532_RS04320 (U0532_04320) ompA 861243..862283 (+) 1041 WP_024201506.1 porin OmpA -
  U0532_RS04325 (U0532_04325) matP 862359..862811 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U0532_RS04330 (U0532_04330) ycbZ 862997..864757 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=831635 U0532_RS04310 WP_000839153.1 859529..860158(-) (sxy/tfoX) [Escherichia coli strain FLI21]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=831635 U0532_RS04310 WP_000839153.1 859529..860158(-) (sxy/tfoX) [Escherichia coli strain FLI21]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1