Detailed information NTG0831617

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QMK55_RS09030
• Genome accession: NZ_CP125378
• Coordinates: 2002742..2004088 (+)
• Length: 448 a.a.
• NCBI ID: WP_320329066.1
• Uniprot ID: -
• Organism: Pseudomonas sp. P8_229
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1997742..2009088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMK55_RS09005 (QMK55_09000)	pgeF	1997953..1998675 (-)	723	WP_102356475.1	peptidoglycan editing factor PgeF	-
QMK55_RS09010 (QMK55_09005)	rluD	1998672..1999634 (-)	963	WP_102356476.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
QMK55_RS09015 (QMK55_09010)	-	1999786..2000805 (+)	1020	WP_102356477.1	outer membrane protein assembly factor BamD	-
QMK55_RS09020 (QMK55_09015)	-	2000933..2001166 (+)	234	WP_102356478.1	PP0621 family protein	-
QMK55_RS09025 (QMK55_09020)	pilS	2001156..2002745 (+)	1590	WP_102356479.1	sensor histidine kinase	Regulator
QMK55_RS09030 (QMK55_09025)	pilR	2002742..2004088 (+)	1347	WP_320329066.1	sigma-54 dependent transcriptional regulator	Regulator
QMK55_RS09035 (QMK55_09030)	thiO	2004221..2005321 (-)	1101	WP_320329067.1	glycine oxidase ThiO	-
QMK55_RS09040 (QMK55_09035)	-	2005379..2005780 (-)	402	WP_320329068.1	type IV pilin protein	-
QMK55_RS09045 (QMK55_09040)	-	2005796..2008885 (-)	3090	WP_320329069.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50010.31 Da
• Isoelectric Point: 6.7010

>NTDB_id=831617 QMK55_RS09030 WP_320329066.1 2002742..2004088(+) (pilR) [Pseudomonas sp. P8_229]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLQRNAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVNTALRMPATGGSVTSIDRRLLGDSPPMRALRKQIDKLARSQA
PIYISGESGSGKELVARLIHEQGPRSSQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHRGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVATGRFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLQRLASGSGQAAARLHPQALEALKSYRFPGNVRELENVLERAHTLCENQVIEAEDLRLSDGNCAVEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=831617 QMK55_RS09030 WP_320329066.1 2002742..2004088(+) (pilR) [Pseudomonas sp. P8_229]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCTTGGG
ACGGATGAAACTCGACACCTTCAGCGCGCGTAATCTCGGCGAAGCCCAGGCGCTGTTGCAGCGCAATGCGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCGGACGGCACCGGGCTGGAGTTGGTGCAGCACATCCAGCAACGTTATCCACAACTACCG
GTGGCGATGATCACCGCGTACGGCAGCCTGGAAACCGCGATCAACGCCTTGAAGGCCGGGGCCTTCGATTTCCTCACCAA
ACCGGTTGATCTCACCCGCCTGCGCGAACTGGTCAACACCGCGCTGCGCATGCCTGCCACCGGCGGCAGCGTCACGTCGA
TCGACCGCCGCCTGCTGGGCGACTCACCGCCGATGCGCGCTCTGCGTAAACAGATCGACAAGCTCGCCCGCAGTCAGGCA
CCGATCTATATCAGCGGCGAATCCGGCAGCGGCAAAGAGCTGGTCGCGCGACTGATCCACGAACAGGGGCCGCGCAGCAG
CCAGCCGTTCGTGCCGGTCAACTGCGGGGCGATTCCGTCAGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGCAAGGGCA
GCTTCACCGGTGCGGTAGAAGACAAACCGGGGCTGTTTCAGGCCGCGCACCGCGGCACCCTGTTTCTCGATGAAGTGGCG
GACCTGCCACTGTCGATGCAAGTCAAACTTCTGCGGGCGATCCAGGAAAAAGCTGTACGTAGCGTTGGCGGCCAACAGGA
AACCGTGGTCGATGTGCGCATCCTTTGCGCCACCCACAAGGACCTGGAAGCGGAAGTCGCCACCGGGCGCTTTCGCCAGG
ATCTGTATTACCGGTTGAACGTGATCGAACTGCGGGTGCCGTCCCTGCGCGAACGGCGCGACGATATCGAAGTACTCGCC
GCGCACATGCTCCAGCGTCTGGCCAGCGGCAGCGGTCAAGCGGCTGCCCGCCTGCACCCGCAAGCGCTTGAAGCGCTGAA
AAGCTATCGCTTTCCGGGGAATGTGCGGGAACTGGAGAACGTCCTCGAACGGGCGCACACGCTGTGCGAAAACCAGGTGA
TCGAGGCTGAAGATTTGCGCCTGAGCGATGGGAATTGTGCAGTCGAGGGCGGCATTGCCGACCTGACGCAGATCGACAAC
CTTGAGGATTACCTGGAGAACGTCGAGCGCAAACTGATCCTTCAGGCGCTGGAGGAGACTCGCTGGAACCGCACGGCGGC
GGCGCAGCGGCTGAGTCTTTCGTTTCGGTCGATGCGCTACAGACTGAAGAAACTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.781	98.884	0.779
pilR	Acinetobacter baumannii strain A118	47.93	100	0.491