Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMK55_RS09255 Genome accession   NZ_CP125378
Coordinates   2052890..2054257 (-) Length   455 a.a.
NCBI ID   WP_095181861.1    Uniprot ID   -
Organism   Pseudomonas sp. P8_229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2047890..2059257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK55_RS09230 (QMK55_09225) - 2047971..2048681 (+) 711 WP_102354476.1 GntR family transcriptional regulator -
  QMK55_RS09235 (QMK55_09230) yjiA 2048795..2049772 (-) 978 WP_320329079.1 GTPase -
  QMK55_RS09240 (QMK55_09235) - 2049926..2050123 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  QMK55_RS09245 (QMK55_09240) - 2050139..2052205 (-) 2067 WP_025108762.1 carbon starvation CstA family protein -
  QMK55_RS09250 (QMK55_09245) - 2052365..2052733 (+) 369 WP_102354478.1 PilZ domain-containing protein -
  QMK55_RS09255 (QMK55_09250) radA 2052890..2054257 (-) 1368 WP_095181861.1 DNA repair protein RadA Machinery gene
  QMK55_RS09260 (QMK55_09255) - 2054301..2054837 (-) 537 WP_102354479.1 ankyrin repeat domain-containing protein -
  QMK55_RS09265 (QMK55_09260) katB 2054898..2056439 (-) 1542 WP_320329080.1 catalase KatB -
  QMK55_RS09270 (QMK55_09265) mscL 2056726..2057139 (+) 414 WP_102354481.1 large-conductance mechanosensitive channel protein MscL -
  QMK55_RS09275 (QMK55_09270) - 2057184..2057960 (-) 777 WP_102354482.1 ferredoxin--NADP reductase -
  QMK55_RS09280 (QMK55_09275) - 2058284..2059012 (+) 729 WP_320329081.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48747.21 Da        Isoelectric Point: 6.8987

>NTDB_id=831618 QMK55_RS09255 WP_095181861.1 2052890..2054257(-) (radA) [Pseudomonas sp. P8_229]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=831618 QMK55_RS09255 WP_095181861.1 2052890..2054257(-) (radA) [Pseudomonas sp. P8_229]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGCGCCTGGAACACCCTGACCGAAACCATGATCGAGAGCGGCGGTGCCACGGCCCCCACCGGGCGCACCGGCTGGGCCG
GGCAACAGGCGCAGATCAAGACGCTGGCCGAAGTCAGCATTGAAGAGATTCCGCGTTTTTCCACCGCCTCCGGTGAGCTG
GACCGGGTGCTCGGCGGCGGTCTGGTGGACGGTTCGGTGGTGCTGATTGGCGGTGACCCGGGCATCGGCAAGTCGACGAT
TCTGCTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGACGCCTCGGACTGCCGCAGGACCAGTTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAATTGCAGTCGGCTCC
CGGTGGCGTCTCGCAAGTGCGCGAAAGTGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGTACGGCGATTTTCCTCG
TCGGTCACGTCACCAAGGAAGGCGCGCTCGCAGGCCCCCGGGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGTCGATTGCGACTGCTGCGTGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGTGCTCAGGAAGAGGTCCCGGGCA
GCGTGGTGATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGATGACAGCCATCTGGCG
AACCCGCGTCGGGTGACCCTGGGCCTGGATCAGAACCGTCTGGCAATGCTGCTCGCGGTCCTGCACCGCCACGGCGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTGAAGGTGCTGGAAACCGCATCTGACCTGGCGCTGA
TGGCGGCGGTGATGTCGAGCCTGCGTAACCGGCCGTTGCCGCATGATCTGCTGGTGTTTGGCGAGGTCGGGCTGTCGGGC
GAGGTGCGCCCGGTGCCAAGCGGGCAGGAGCGCTTGAAGGAGGCGGCCAAGCATGGTTTCAAGCGAGCGATCGTGCCCAA
GGGCAATGCACCGAAAGAGTCGCCGGCGGGGTTGCAGATCATCGCGGTGACTCGTCTGGAGCAGGCTCTGGACGCACTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464
  radA Streptococcus mitis SK321

46.272

100

0.464
  radA Streptococcus mitis NCTC 12261

46.053

100

0.462