Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QMK58_RS25525 Genome accession   NZ_CP125377
Coordinates   5699180..5700397 (+) Length   405 a.a.
NCBI ID   WP_053162480.1    Uniprot ID   -
Organism   Pseudomonas sp. P8_241     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5694180..5705397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK58_RS25510 (QMK58_25510) - 5694490..5697480 (+) 2991 WP_320395593.1 DUF748 domain-containing protein -
  QMK58_RS25515 (QMK58_25515) - 5697759..5698115 (-) 357 WP_320395594.1 BON domain-containing protein -
  QMK58_RS25520 (QMK58_25520) - 5698517..5698939 (-) 423 WP_320395595.1 pilin -
  QMK58_RS25525 (QMK58_25525) pilC 5699180..5700397 (+) 1218 WP_053162480.1 type II secretion system F family protein Machinery gene
  QMK58_RS25530 (QMK58_25530) pilD 5700399..5701271 (+) 873 WP_053162482.1 prepilin peptidase Machinery gene
  QMK58_RS25535 (QMK58_25535) coaE 5701268..5701891 (+) 624 WP_053162484.1 dephospho-CoA kinase -
  QMK58_RS25540 (QMK58_25540) yacG 5701888..5702088 (+) 201 WP_007970539.1 DNA gyrase inhibitor YacG -
  QMK58_RS25545 (QMK58_25545) - 5702124..5702813 (-) 690 WP_053162486.1 energy-coupling factor ABC transporter permease -
  QMK58_RS25550 (QMK58_25550) - 5702885..5703817 (-) 933 WP_053162488.1 LysR family transcriptional regulator -
  QMK58_RS25555 (QMK58_25555) - 5703940..5704182 (+) 243 WP_053162490.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43988.01 Da        Isoelectric Point: 10.3161

>NTDB_id=831596 QMK58_RS25525 WP_053162480.1 5699180..5700397(+) (pilC) [Pseudomonas sp. P8_241]
MAVKAAKISVYTWEGTDRKGSKVTGELNGANPALIKAQLRKQGITPAKVRKKPPSLFSIGKRIKAHDIALFTRQMATMVK
AGVPLLQSFDIIAEGFDNPAMRKMVDELKQDVAAGNSFAAALRRKPQYFDDLYCNLVDAGEQAGALDTLLERVATYKEKS
ERLKAKIKKAMTYPLVVVLVAAIVTGILLVKVVPQFESVFKGFGAELPAFTVMVISLSQFMQAWWWAVLGALLVAIFGMR
HALKASRVFRERVDAWLLNLPLVGSLMYKSAVARFARTLSTTFAAGVPLVQALGSVAGATGNVVFKRAVLRIKQDIATGM
QLNFSMRTSGVFPSMAIQMTAIGEESGTLDAMLDKVAGFYEDEVDNLVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=831596 QMK58_RS25525 WP_053162480.1 5699180..5700397(+) (pilC) [Pseudomonas sp. P8_241]
ATGGCGGTCAAGGCAGCAAAAATCAGTGTCTATACGTGGGAAGGTACAGACCGCAAAGGCAGCAAAGTCACCGGCGAGCT
CAACGGGGCGAACCCGGCACTGATCAAGGCGCAATTGCGCAAGCAGGGCATCACGCCCGCCAAGGTACGCAAGAAACCAC
CGTCACTGTTCAGCATCGGCAAACGCATCAAAGCCCACGACATTGCCCTGTTCACCCGGCAAATGGCGACCATGGTGAAG
GCCGGCGTGCCGTTATTGCAGTCGTTCGACATCATCGCCGAAGGCTTCGATAACCCGGCCATGCGCAAAATGGTGGATGA
GCTGAAACAGGACGTTGCAGCGGGCAACAGCTTCGCCGCGGCCCTGCGCAGGAAACCTCAGTATTTCGATGATCTCTACT
GCAACCTGGTCGACGCTGGCGAACAGGCCGGCGCCCTGGATACCTTGCTGGAACGCGTTGCGACCTATAAGGAAAAGAGC
GAGCGCCTCAAGGCCAAGATCAAGAAGGCCATGACCTATCCTCTGGTGGTGGTATTGGTCGCGGCCATTGTCACCGGGAT
TCTCCTGGTCAAAGTGGTGCCGCAGTTCGAATCCGTGTTCAAGGGCTTTGGCGCCGAACTGCCGGCGTTCACGGTGATGG
TCATCAGCCTGTCGCAGTTCATGCAGGCTTGGTGGTGGGCGGTGCTGGGCGCACTGCTCGTTGCGATCTTCGGTATGCGC
CACGCGCTCAAGGCATCCCGGGTTTTTCGCGAACGAGTGGACGCCTGGCTCCTCAACCTGCCGCTGGTGGGCAGCCTGAT
GTACAAGTCCGCCGTGGCCCGGTTCGCCCGCACCCTGTCGACGACCTTCGCTGCTGGCGTCCCATTGGTGCAAGCCTTGG
GGTCCGTGGCCGGTGCCACCGGTAACGTCGTGTTCAAACGCGCCGTGCTGCGCATCAAGCAAGACATCGCAACCGGCATG
CAATTGAATTTTTCCATGCGCACCAGCGGAGTCTTTCCGAGCATGGCGATCCAGATGACCGCCATCGGCGAAGAGTCCGG
CACGCTGGACGCTATGCTCGACAAGGTCGCCGGCTTCTATGAGGACGAGGTCGATAACCTGGTCGATAACCTCACCAGTC
TGATGGAGCCATTCATCATGGTGGTACTGGGTGTTATCGTCGGCGGACTGGTAGTTGCGATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.346

100

0.723
  pilC Acinetobacter baylyi ADP1

57.843

100

0.583
  pilC Acinetobacter baumannii D1279779

57.353

100

0.578
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilC Vibrio cholerae strain A1552

43.687

97.778

0.427
  pilG Neisseria gonorrhoeae MS11

42.786

99.259

0.425
  pilG Neisseria meningitidis 44/76-A

42.289

99.259

0.42
  pilC Vibrio campbellii strain DS40M4

40.92

100

0.417
  pilC Thermus thermophilus HB27

38.5

98.765

0.38