Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QJQ50_RS03750 Genome accession   NZ_CP125315
Coordinates   788140..789381 (+) Length   413 a.a.
NCBI ID   WP_049174522.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain k32     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783140..794381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJQ50_RS03730 (QJQ50_03730) - 784279..785571 (+) 1293 WP_049174519.1 pitrilysin family protein -
  QJQ50_RS03735 (QJQ50_03735) - 785571..786299 (+) 729 WP_005713294.1 SDR family oxidoreductase -
  QJQ50_RS03740 (QJQ50_03740) - 786386..787321 (+) 936 WP_032964918.1 helix-turn-helix domain-containing protein -
  QJQ50_RS03745 (QJQ50_03745) pgsA 787318..787911 (+) 594 WP_005688184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJQ50_RS03750 (QJQ50_03750) cinA 788140..789381 (+) 1242 WP_049174522.1 competence/damage-inducible protein A Machinery gene
  QJQ50_RS03755 (QJQ50_03755) recA 789433..790422 (+) 990 Protein_707 recombinase RecA -
  QJQ50_RS03760 (QJQ50_03760) rny 791006..792577 (+) 1572 WP_005684479.1 ribonuclease Y -
  QJQ50_RS03765 (QJQ50_03765) - 792666..793322 (-) 657 WP_134794692.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44501.11 Da        Isoelectric Point: 7.0416

>NTDB_id=831070 QJQ50_RS03750 WP_049174522.1 788140..789381(+) (cinA) [Lacticaseibacillus rhamnosus strain k32]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQHQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVFESRVMRFFGIGESQLVTDLSDLITNQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=831070 QJQ50_RS03750 WP_049174522.1 788140..789381(+) (cinA) [Lacticaseibacillus rhamnosus strain k32]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATCACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGAATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTAGTGGAAGACGCTGACGCTATGGCCAAGTTGGCGGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGGCGCAATCGTACTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCACCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCACGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTTGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGATTTAAGTGATTTAATTACCAACCAGACGAATCCGACACTTGCAACCTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTATTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCC
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACAGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAACGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.306

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.831

100

0.518
  cinA Streptococcus pneumoniae R6

50.831

100

0.518
  cinA Streptococcus pneumoniae D39

50.594

100

0.516
  cinA Streptococcus mutans UA159

50.962

100

0.513
  cinA Bacillus subtilis subsp. subtilis str. 168

44.66

99.758

0.446
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38