Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QL281_RS21650 Genome accession   NZ_CP125292
Coordinates   4067708..4068958 (+) Length   416 a.a.
NCBI ID   WP_017694898.1    Uniprot ID   A0AAP2M3Y6
Organism   Bacillus subtilis strain SRCM117797     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4062708..4073958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS21620 (QL281_21620) ymfH 4062798..4064084 (+) 1287 WP_003244823.1 pitrilysin family protein -
  QL281_RS21625 (QL281_21625) efpI 4064139..4064867 (+) 729 WP_041336006.1 EF-P-5 aminopentanone reductase -
  QL281_RS21630 (QL281_21630) ymfJ 4064948..4065205 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  QL281_RS21635 (QL281_21635) - 4065335..4066126 (+) 792 WP_003220998.1 YmfK family protein -
  QL281_RS21640 (QL281_21640) rodZ 4066193..4067059 (+) 867 WP_214287657.1 RodZ family helix-turn-helix domain-containing protein -
  QL281_RS21645 (QL281_21645) pgsA 4067109..4067690 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QL281_RS21650 (QL281_21650) cinA 4067708..4068958 (+) 1251 WP_017694898.1 competence/damage-inducible protein A Machinery gene
  QL281_RS21655 (QL281_21655) recA 4069131..4070177 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  QL281_RS21660 (QL281_21660) pbpX 4070345..4071520 (+) 1176 WP_041336012.1 serine hydrolase domain-containing protein -
  QL281_RS21665 (QL281_21665) rny 4071796..4073358 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45526.78 Da        Isoelectric Point: 5.2478

>NTDB_id=830944 QL281_RS21650 WP_017694898.1 4067708..4068958(+) (cinA) [Bacillus subtilis strain SRCM117797]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=830944 QL281_RS21650 WP_017694898.1 4067708..4068958(+) (cinA) [Bacillus subtilis strain SRCM117797]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAACATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGACACGTTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.279

100

0.993
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375