NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	R3F76_RS19725	Genome accession	NZ_CP139647
Coordinates	4045223..4045855 (+)	Length	210 a.a.
NCBI ID	WP_014494833.1	Uniprot ID	A0A0A3YMQ2
Organism	Bradyrhizobium japonicum strain CNPSo 23
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4040223..4050855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3F76_RS19705 (R3F76_19705)	-	4041331..4041765 (+)	435	WP_039147866.1	GNAT family N-acetyltransferase	-
R3F76_RS19710 (R3F76_19710)	-	4041793..4043145 (-)	1353	WP_039147868.1	multicopper oxidase family protein	-
R3F76_RS19720 (R3F76_19720)	tig	4043558..4044919 (+)	1362	WP_014494832.1	trigger factor	-
R3F76_RS19725 (R3F76_19725)	clpP	4045223..4045855 (+)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R3F76_RS19730 (R3F76_19730)	clpX	4046317..4047588 (+)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R3F76_RS19735 (R3F76_19735)	lon	4047913..4050336 (+)	2424	WP_014494835.1	endopeptidase La	-
R3F76_RS19740 (R3F76_19740)	-	4050406..4050809 (+)	404	Protein_3925	GFA family protein	-

Sequence

Protein

Download Length: 210 a.a. Molecular weight: 23407.03 Da Isoelectric Point: 5.7683

                                >NTDB_id=830573 R3F76_RS19725 WP_014494833.1 4045223..4045855(+) (clpP) [Bradyrhizobium japonicum strain CNPSo 23]

MRDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISMYINSPGGVVT

SGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNE

IYVKHTGQTYKTIEDALERDKFLTANDAKEFGLVDKVIDKRAEEPAAKPQ

Nucleotide

Download Length: 633 bp

                                >NTDB_id=830573 R3F76_RS19725 WP_014494833.1 4045223..4045855(+) (clpP) [Bradyrhizobium japonicum strain CNPSo 23]

ATGCGCGATCCGGTTGAAACCTATATGAACCTCGTGCCCATGGTGGTCGAGCAGACCAACCGTGGCGAGCGCGCCTACGA

CATCTTTTCGCGCCTGTTGAAGGAGCGCATCATTTTCCTGACCGGGCCGGTCGAGGACGGCATGTCGACGCTGGTGGTCG

CACAGCTCCTGTTCCTCGAAGCGGAAAATCCGAAGAAGGAAATCTCGATGTACATCAACTCGCCGGGCGGCGTGGTGACG

TCGGGCCTCGCGATCTACGACACCATGCAGTTCATCCGCCCGCCGGTCTCGACGCTGTGCACGGGCCAGGCCGCCTCGAT

GGGCTCGCTGCTGCTCGCCGCCGGCGAGAAGGACATGCGCTTCTCGCTGCCGAACGCGCGCATCATGGTGCATCAGCCCT

CCGGCGGCTTCCAGGGCCAGGCCACCGACATCATGCTGCACGCGCAGGAAATCCTGAACCTGAAGAAGCGGCTCAACGAG

ATCTACGTGAAGCACACCGGTCAGACCTACAAGACGATCGAGGACGCGCTGGAACGCGACAAGTTCCTGACCGCGAACGA

CGCCAAGGAGTTCGGCCTGGTCGACAAGGTCATCGACAAGCGCGCCGAGGAGCCGGCGGCGAAACCGCAGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0A3YMQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	59.474	90.476	0.538
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.421	90.476	0.529
clpP	Lactococcus lactis subsp. cremoris KW2	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.168	90.952	0.438
clpP	Streptococcus pyogenes JRS4	48.168	90.952	0.438
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	47.423	92.381	0.438
clpP	Streptococcus mutans UA159	47.396	91.429	0.433
clpP	Streptococcus pneumoniae D39	47.368	90.476	0.429
clpP	Streptococcus pneumoniae TIGR4	47.368	90.476	0.429
clpP	Streptococcus pneumoniae R6	47.368	90.476	0.429
clpP	Streptococcus pneumoniae Rx1	47.368	90.476	0.429
clpP	Streptococcus thermophilus LMG 18311	46.316	90.476	0.419
clpP	Streptococcus thermophilus LMD-9	46.316	90.476	0.419

Detailed information NTG0830573