Detailed information NTG0830574

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: R3F76_RS19730
• Genome accession: NZ_CP139647
• Coordinates: 4046317..4047588 (+)
• Length: 423 a.a.
• NCBI ID: WP_014494834.1
• Uniprot ID: A0ABY7MCD4
• Organism: Bradyrhizobium japonicum strain CNPSo 23
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4041317..4052588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3F76_RS19705 (R3F76_19705)	-	4041331..4041765 (+)	435	WP_039147866.1	GNAT family N-acetyltransferase	-
R3F76_RS19710 (R3F76_19710)	-	4041793..4043145 (-)	1353	WP_039147868.1	multicopper oxidase family protein	-
R3F76_RS19720 (R3F76_19720)	tig	4043558..4044919 (+)	1362	WP_014494832.1	trigger factor	-
R3F76_RS19725 (R3F76_19725)	clpP	4045223..4045855 (+)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R3F76_RS19730 (R3F76_19730)	clpX	4046317..4047588 (+)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R3F76_RS19735 (R3F76_19735)	lon	4047913..4050336 (+)	2424	WP_014494835.1	endopeptidase La	-
R3F76_RS19740 (R3F76_19740)	-	4050406..4050809 (+)	404	Protein_3925	GFA family protein	-
R3F76_RS19750 (R3F76_19750)	-	4051213..4051404 (+)	192	WP_014494837.1	hypothetical protein	-
R3F76_RS19755 (R3F76_19755)	-	4051584..4052444 (+)	861	WP_039147870.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46576.40 Da
• Isoelectric Point: 5.5461

>NTDB_id=830574 R3F76_RS19730 WP_014494834.1 4046317..4047588(+) (clpX) [Bradyrhizobium japonicum strain CNPSo 23]
MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSRDGIPTPKEICKVLDDYVIGQ
SHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
ILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT
NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLK
KILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLEGVEEVVISREVV
EGTARPLYIYADRSDRAVENASA

Nucleotide

• Length: 1272 bp

>NTDB_id=830574 R3F76_RS19730 WP_014494834.1 4046317..4047588(+) (clpX) [Bradyrhizobium japonicum strain CNPSo 23]
ATGAGTAAGGTCGGCACGAGCGACTCCAAGAACACGCTGTATTGCTCGTTCTGCGGCAAGAGCCAGCACGAAGTCCGCAA
ACTGATCGCGGGTCCCACGGTCTTCATCTGCGACGAGTGCGTTGAGCTCTGCATGGACATCATCCGCGAGGAGAACAAAT
CCTCGCTCGTGAAGTCGCGCGACGGCATTCCGACGCCGAAGGAAATCTGCAAGGTCCTGGACGATTACGTCATCGGCCAG
AGCCATGCGAAGAAGGTCCTGTCGGTCGCGGTGCACAATCACTACAAGCGTCTCAACCACCAGACCAAGCACAACGACGT
CGAGCTCGCGAAGTCGAACATCCTGCTGATCGGTCCGACCGGTTCGGGCAAGACGCTGCTCGCGCAGACGCTCGCCCGCA
TCCTGGACGTGCCGTTCACGATGGCCGATGCGACGACCCTGACCGAAGCCGGCTATGTCGGCGAGGACGTCGAGAACATC
ATCCTGAAGCTGCTGCAGGCCGCCGACTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTACATCGACGAAATCGACAA
GATCAGCCGCAAGTCCGACAATCCCTCAATCACGCGCGACGTGTCGGGTGAGGGCGTGCAGCAGGCGTTGCTGAAGATCA
TGGAAGGCACGGTGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGATACCACC
AACATCCTGTTCATCTGCGGCGGTGCGTTCGCCGGCCTCGAGAAGATCATCTCGGCGCGCGGGCGGTCGACCTCGATCGG
TTTCGCCGCCCAGGTGCTGGCGCCGGAGGATCGCCGTACCGGCGAGATCTTCCGTCACGTCGAGCCTGAGGACCTCCTGA
AGTACGGTCTCATCCCCGAATTCGTCGGCCGTCTGCCGGTCGTGGCGACGCTCGAGGATCTGGACGAGACCTCGCTGAAG
AAGATCCTCACCGAGCCGAAGAACGCGCTGGTGAAACAGTACCAGCGGCTGTTCGAGATGGAGAACATCGAGCTGACCTT
CGCCGACGAGGCGCTTGGCGCGGTCGCCCGCAAGGCGATCGAGCGCAAGACCGGCGCGCGTGGTCTGCGTTCGATCCTCG
AGGCGATCCTGCTCGAGACCATGTTCGACCTGCCGGGCCTGGAAGGTGTGGAAGAAGTCGTGATTTCGCGCGAAGTCGTG
GAAGGCACGGCCCGTCCGCTCTACATCTACGCTGATCGGTCCGATCGCGCCGTCGAGAACGCCAGCGCCTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-385)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.728	95.745	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.745	0.527