Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   R9806_RS25535 Genome accession   NZ_CP139044
Coordinates   5952438..5953043 (+) Length   201 a.a.
NCBI ID   WP_030783279.1    Uniprot ID   -
Organism   Streptomyces sp. KN37     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5947438..5958043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9806_RS25505 (R9806_25505) - 5947609..5948073 (+) 465 WP_223774650.1 HD domain-containing protein -
  R9806_RS25510 (R9806_25510) - 5948078..5949283 (-) 1206 WP_223774649.1 acyltransferase family protein -
  R9806_RS25515 (R9806_25515) - 5949915..5950109 (+) 195 WP_125512773.1 hypothetical protein -
  R9806_RS25530 (R9806_25530) tig 5950641..5952023 (+) 1383 WP_223774648.1 trigger factor -
  R9806_RS25535 (R9806_25535) clpP 5952438..5953043 (+) 606 WP_030783279.1 ATP-dependent Clp protease proteolytic subunit Regulator
  R9806_RS25540 (R9806_25540) clpP 5953107..5953811 (+) 705 WP_223774647.1 ATP-dependent Clp protease proteolytic subunit Regulator
  R9806_RS25545 (R9806_25545) clpX 5953979..5955265 (+) 1287 WP_205034543.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  R9806_RS25550 (R9806_25550) - 5955331..5956188 (-) 858 WP_320590962.1 hypothetical protein -
  R9806_RS25555 (R9806_25555) - 5956243..5957157 (-) 915 WP_320590963.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21252.16 Da        Isoelectric Point: 4.8122

>NTDB_id=829233 R9806_RS25535 WP_030783279.1 5952438..5953043(+) (clpP) [Streptomyces sp. KN37]
MPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAAEPDKDIFLYINSPGGSITAGMAVYDTMQY
IKNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAHHTGQTVE
QITRDSDRDRWFDPQEAKEYGLIDDIMPTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=829233 R9806_RS25535 WP_030783279.1 5952438..5953043(+) (clpP) [Streptomyces sp. KN37]
ATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGGCCGTGGACGACGACATTGCCAACAAGATCACCGCCCAGTTGCTGCTCCTTGCCGCAGAGCCGG
ACAAGGACATCTTCCTTTACATCAACAGCCCCGGCGGCTCGATCACGGCCGGCATGGCGGTCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTCACGATCGCGATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCAGCGCCGGTACGCCCGG
CAAGCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCGGGTTCCGCGTCGGACATCA
AGATCCACGCCGAGCGTCTGCTGCACACCAAGAAGCGGATGGCCGAGCTCACCGCTCACCACACCGGCCAGACCGTCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACCCGCAGGAGGCCAAGGAGTACGGCCTCATCGACGACATCAT
GCCCACCGCCGCCGGCATGCCGGGCGGGGGCGGCACGGGAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.649

85.075

0.507
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.567

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

54.335

86.07

0.468
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.757

86.07

0.463
  clpP Streptococcus mutans UA159

53.179

86.07

0.458
  clpP Streptococcus thermophilus LMG 18311

51.445

86.07

0.443
  clpP Streptococcus thermophilus LMD-9

51.445

86.07

0.443
  clpP Streptococcus pyogenes JRS4

51.445

86.07

0.443
  clpP Streptococcus pyogenes MGAS315

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

50.867

86.07

0.438
  clpP Streptococcus pneumoniae D39

50.867

86.07

0.438
  clpP Streptococcus pneumoniae R6

50.867

86.07

0.438
  clpP Streptococcus pneumoniae TIGR4

50.867

86.07

0.438