Detailed information NTG0829235

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: R9806_RS25545
• Genome accession: NZ_CP139044
• Coordinates: 5953979..5955265 (+)
• Length: 428 a.a.
• NCBI ID: WP_205034543.1
• Uniprot ID: -
• Organism: Streptomyces sp. KN37
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5948979..5960265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R9806_RS25515 (R9806_25515)	-	5949915..5950109 (+)	195	WP_125512773.1	hypothetical protein	-
R9806_RS25530 (R9806_25530)	tig	5950641..5952023 (+)	1383	WP_223774648.1	trigger factor	-
R9806_RS25535 (R9806_25535)	clpP	5952438..5953043 (+)	606	WP_030783279.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R9806_RS25540 (R9806_25540)	clpP	5953107..5953811 (+)	705	WP_223774647.1	ATP-dependent Clp protease proteolytic subunit	Regulator
R9806_RS25545 (R9806_25545)	clpX	5953979..5955265 (+)	1287	WP_205034543.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
R9806_RS25550 (R9806_25550)	-	5955331..5956188 (-)	858	WP_320590962.1	hypothetical protein	-
R9806_RS25555 (R9806_25555)	-	5956243..5957157 (-)	915	WP_320590963.1	hypothetical protein	-
R9806_RS25560 (R9806_25560)	-	5957274..5958314 (-)	1041	WP_223774644.1	hypothetical protein	-
R9806_RS25565 (R9806_25565)	-	5958519..5959355 (-)	837	WP_223774643.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46899.68 Da
• Isoelectric Point: 4.6995

>NTDB_id=829235 R9806_RS25545 WP_205034543.1 5953979..5955265(+) (clpX) [Streptomyces sp. KN37]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREMEEKDQFEDIMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
ADVVRSNVNPTLVPREVRGPGAGEQKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=829235 R9806_RS25545 WP_205034543.1 5953979..5955265(+) (clpX) [Streptomyces sp. KN37]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGAAAGAGTCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGTAACGAGATCATCGAGGAAGAGCTCGCGGAGACGA
GCGAGGTCCGCTGGGAGGAACTCCCGAAGCCTCGCGAGATCTACGAATTCCTTGAGGGCTACGTGGTGGGCCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTAGCGGTGTACAACCACTACAAGCGGGTCCAGGCAGGGGAGAACGGCGGCGCGCAGGGCCG
TGACGACGCGATCGAACTCGCGAAGTCCAACATCCTGCTGCTCGGCCCGACCGGTTCCGGAAAGACGCTCCTGGCGCAGA
CGCTCGCCCGGATGCTGAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCGGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGATGTCTCGGGCGAGGGCGTCCAGCAGGCTC
TGCTGAAGATCCTGGAGGGCACCACGGCCTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGTGCCTTCTCCGGCCTCGAAAAGATCATCGAGTCGCGGGCGGGCGC
GAAGGGCATCGGCTTCGGCGCCACCATCCGCTCCAAGCGCGAGATGGAGGAGAAGGACCAGTTCGAGGACATCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGATCACCTCGGTCCACAACCTCGACCGC
GAGGCCCTGCTCCAGATCCTGGTCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTGTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCGGACCAGGCGATCCTGCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTCCAGTCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACG
GCGGACGTCGTCCGGTCGAACGTGAACCCGACGCTGGTGCCGCGCGAGGTGCGGGGCCCGGGTGCCGGGGAGCAGAAGTC
CGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.925	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.479	96.495	0.526