Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QLQ46_RS12830 Genome accession   NZ_CP124887
Coordinates   2686020..2687264 (-) Length   414 a.a.
NCBI ID   WP_010713703.1    Uniprot ID   -
Organism   Enterococcus faecalis strain EfsPNK7     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2681020..2692264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ46_RS12810 (QLQ46_12810) - 2681490..2681876 (-) 387 WP_002359008.1 YlbF family regulator -
  QLQ46_RS12815 (QLQ46_12815) - 2681950..2682747 (-) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  QLQ46_RS12820 (QLQ46_12820) rny 2682907..2684463 (-) 1557 WP_002354863.1 ribonuclease Y -
  QLQ46_RS12825 (QLQ46_12825) recA 2684860..2685906 (-) 1047 WP_002354860.1 recombinase RecA Machinery gene
  QLQ46_RS12830 (QLQ46_12830) cinA 2686020..2687264 (-) 1245 WP_010713703.1 competence/damage-inducible protein A Machinery gene
  QLQ46_RS12835 (QLQ46_12835) - 2687456..2688661 (+) 1206 WP_010706981.1 hypothetical protein -
  QLQ46_RS12840 (QLQ46_12840) - 2688740..2689369 (-) 630 WP_016614229.1 NAD(P)-dependent oxidoreductase -
  QLQ46_RS12845 (QLQ46_12845) - 2689525..2690001 (-) 477 WP_002408372.1 Rrf2 family transcriptional regulator -
  QLQ46_RS12850 (QLQ46_12850) - 2690090..2690473 (-) 384 WP_002358999.1 YccF domain-containing protein -
  QLQ46_RS12855 (QLQ46_12855) - 2690637..2691428 (+) 792 WP_010713701.1 hypothetical protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45291.39 Da        Isoelectric Point: 4.5796

>NTDB_id=828768 QLQ46_RS12830 WP_010713703.1 2686020..2687264(-) (cinA) [Enterococcus faecalis strain EfsPNK7]
MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRSDLIVLCGGLGPTEDDLTKQV
VAQYLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLAIEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMF
QQAARPLLIDAFPQEEQLISRVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE
EKILAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIFKGGFVTYSQETKENFLGISH
ELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDPLEDQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVM
RGLDLLRRRIINKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=828768 QLQ46_RS12830 WP_010713703.1 2686020..2687264(-) (cinA) [Enterococcus faecalis strain EfsPNK7]
ATGAAAGCAGAAATCATTGCAGTCGGAACAGAGTTATTACTGGGACAAGTAGTGAATACCAACGCCACCTTTTTATCAGA
AGAGTTAGCTGCGCTAGGCATCGATGTTTACTATCAGACCGTTGTTGGCGATAACGGCGGACGCTTAGAAACGCTACTAA
CAGAAGCAGAACAAAGAAGTGATTTAATTGTCTTATGTGGAGGGCTAGGACCTACAGAAGACGATTTAACCAAGCAAGTT
GTCGCACAATATCTCCATAAATCATTAGTAGAAGATCAAGAAGGATTGAACCGCTTGCACCAGTTTTTCCAACAGTCTAA
GCGGCCAATGACGGAAAATAATCTACGACAAGTGTTAGCCATTGAAGGTGGACAAGTTCTTCAAAACCCGACAGGATTAG
CGGTTGGTTCTTTCGTAACAGAAGGGACAACAAGCTATTTGCTCTTACCAGGGCCGCCCAATGAATTAATTCCGATGTTC
CAACAAGCGGCACGACCTTTATTGATTGATGCGTTTCCACAAGAAGAACAATTGATTTCAAGAGTCTTGCGTTTTTATGG
GATTGGTGAATCACAGCTGGTGACCGAGATTCAATCGTTGATTGCGCACCAAACGAATCCAACCATTGCGCCTTATGCTA
AGCCTAATGAAGTGACACTTCGTTTAACAGTTAAAACAAAAGACTTAGTAGCTGGCGAAGAATTATTAACAGCGACGGAA
GAAAAGATTTTAGCTAAAGTGGGAGACTATTTTTATGGGTATGGGGATGACAATAGTTTAGCCAAGGTAACAGTGGATTT
GTTATTACAAAACGGACAAACCGTCACGGCTGCTGAGAGCCTCACCGCTGGCCTATTCCAAAGTACACTGGGGGAAATTG
CGGGCGCTTCGAAGATTTTTAAGGGAGGCTTCGTGACGTATTCGCAAGAAACAAAAGAGAACTTTTTAGGAATTTCTCAT
GAACTTTTAGAAGAACATGGCACGGTAAGTGAAGCGTGTGCCAAAGAAATGGCAGAGAAAGCGCGTCAGTTAGCTAAATC
TAACTATGGTTTATCATTTACTGGGGTCGCTGGTGACCCACTCGAAGATCAACCGACAGGCACTGTTTGGATTGGGCTGG
CGGAAGAAGGCCAACCAACTGTTGCAGAATGTTTCCATTTTAACCGTGACCGAAATTATATTAGACAGAGTGCGGTTATG
CGAGGGTTAGATCTTTTGCGGCGCCGAATCATTAATAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

52.632

100

0.531
  cinA Streptococcus mitis SK321

51.773

100

0.529
  cinA Streptococcus mitis NCTC 12261

51.537

100

0.527
  cinA Streptococcus pneumoniae TIGR4

50.827

100

0.519
  cinA Streptococcus pneumoniae D39

50.591

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.514
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.514
  cinA Bacillus subtilis subsp. subtilis str. 168

48.522

98.068

0.476
  cinA Streptococcus suis isolate S10

44.526

99.275

0.442