Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QF117_RS18515 Genome accession   NZ_CP124614
Coordinates   2771467..2772693 (+) Length   408 a.a.
NCBI ID   WP_282387517.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2766467..2777693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS18490 (QF117_18490) fldB 2766750..2767268 (+) 519 WP_282387509.1 flavodoxin FldB -
  QF117_RS18495 (QF117_18495) ampD 2767337..2767876 (-) 540 WP_282387511.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QF117_RS18500 (QF117_18500) nadC 2768009..2768899 (+) 891 WP_282387512.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QF117_RS18505 (QF117_18505) - 2769163..2769600 (+) 438 WP_282387514.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QF117_RS18510 (QF117_18510) pilB 2769600..2771345 (+) 1746 WP_282387516.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QF117_RS18515 (QF117_18515) pilC 2771467..2772693 (+) 1227 WP_282387517.1 type II secretion system F family protein Machinery gene
  QF117_RS18520 (QF117_18520) pilD 2772831..2773700 (+) 870 WP_282387518.1 A24 family peptidase Machinery gene
  QF117_RS18525 (QF117_18525) coaE 2773791..2774444 (+) 654 WP_282387519.1 dephospho-CoA kinase -
  QF117_RS18530 (QF117_18530) zapD 2774431..2775171 (+) 741 WP_282387520.1 cell division protein ZapD -
  QF117_RS18535 (QF117_18535) yacG 2775378..2775575 (+) 198 WP_282387521.1 DNA gyrase inhibitor YacG -
  QF117_RS18540 (QF117_18540) rplS 2775872..2776225 (-) 354 WP_017036649.1 50S ribosomal protein L19 -
  QF117_RS18545 (QF117_18545) trmD 2776274..2777023 (-) 750 WP_282387524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QF117_RS18550 (QF117_18550) rimM 2777071..2777625 (-) 555 WP_282387525.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44872.96 Da        Isoelectric Point: 10.2986

>NTDB_id=826782 QF117_RS18515 WP_282387517.1 2771467..2772693(+) (pilC) [Vibrio sp. YMD68]
MIKTKQIQLKNYRWKGLNTSGKRVSGQMLALSEWEVRDKLNDQHIQIKKIKKGSISAFTRISHRVKARDITVLTRQLATM
LGTGVPIIQALKLVADNNRKAEMKSILSQVSKGVEAGTPISKALRTASTHFDSLYVDLVATGEQSGNLSEVFERLATYRE
KSEQLRAKVIKALIYPAMVVLVALSVSYLMLTVVIPEFESMFQGFGADLPWFTQQVLLLSHWVQAYSLTLALSSVGLVLL
VKTLNKKSSRVRLSTSRLGLKVPIIGGVFSKAAIAKFSRTLATSFSAGIPILTSLKTTAKTSGNLHYQTAIDAVYKDTAA
GMPMYIAMRNTCVFPEMVLQMVMIGEESGCLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVIGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=826782 QF117_RS18515 WP_282387517.1 2771467..2772693(+) (pilC) [Vibrio sp. YMD68]
ATGATAAAAACTAAGCAAATTCAATTAAAAAACTATCGATGGAAAGGCCTGAATACTTCTGGAAAGCGCGTCTCGGGGCA
AATGTTGGCTCTGTCGGAATGGGAAGTGCGAGACAAACTCAACGATCAGCACATTCAAATAAAAAAAATCAAGAAAGGCA
GTATCTCTGCCTTCACACGAATATCCCACAGAGTCAAAGCCAGAGACATTACAGTCTTAACCCGTCAACTTGCGACCATG
TTAGGGACAGGGGTTCCTATCATACAAGCGCTCAAACTGGTGGCCGACAACAATCGAAAAGCTGAAATGAAGTCGATACT
GTCTCAAGTGAGCAAGGGAGTAGAGGCTGGCACTCCAATATCGAAAGCACTTCGCACCGCCAGTACTCATTTTGATTCGT
TGTACGTAGATTTGGTCGCGACAGGTGAACAGTCAGGTAATTTATCCGAGGTTTTTGAAAGGCTCGCAACGTACCGAGAA
AAAAGTGAGCAGCTCAGAGCCAAAGTCATTAAAGCGTTGATCTACCCTGCGATGGTTGTACTGGTGGCGTTAAGTGTCTC
TTACCTGATGCTCACTGTCGTTATTCCAGAGTTTGAGAGCATGTTCCAAGGATTTGGCGCTGATCTTCCTTGGTTTACCC
AACAAGTACTATTGCTTTCTCACTGGGTCCAAGCGTACAGCTTAACCCTGGCTTTAAGTTCCGTTGGCTTGGTGCTATTG
GTAAAAACCCTGAACAAGAAATCGTCTCGGGTACGCTTGTCGACCAGCCGACTCGGTCTTAAAGTCCCTATTATCGGCGG
CGTATTTTCAAAAGCGGCGATTGCTAAATTCAGTCGCACCCTGGCAACCAGTTTTAGCGCAGGCATTCCTATTTTAACCA
GCTTAAAAACCACCGCTAAAACCTCTGGAAACCTCCACTATCAAACCGCCATCGATGCGGTGTACAAAGACACCGCTGCT
GGCATGCCGATGTACATTGCCATGCGAAACACCTGTGTTTTTCCTGAAATGGTCTTACAGATGGTGATGATCGGAGAAGA
GTCTGGCTGCCTAGACGACATGCTCAACAAAGTGGCGACTATCTATGAATTTGAAGTCGACAACACGGTGGATAACCTAG
GTAAAATTCTCGAGCCATTAATCATCGTATTCTTGGGGACAGTGATTGGCGGGCTTGTCGTTGCAATGTATTTACCAATT
TTTAACTTAATGAGTGTATTAGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.147

100

0.801
  pilC Vibrio campbellii strain DS40M4

75.184

99.755

0.75
  pilC Pseudomonas stutzeri DSM 10701

41.089

99.02

0.407
  pilC Legionella pneumophila strain ERS1305867

41.562

97.304

0.404
  pilC Acinetobacter baylyi ADP1

41.31

97.304

0.402
  pilC Acinetobacter baumannii D1279779

40.5

98.039

0.397
  pilG Neisseria gonorrhoeae MS11

39.454

98.775

0.39
  pilG Neisseria meningitidis 44/76-A

38.806

98.529

0.382