Detailed information NTG0826783

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QF117_RS18520
• Genome accession: NZ_CP124614
• Coordinates: 2772831..2773700 (+)
• Length: 289 a.a.
• NCBI ID: WP_282387518.1
• Uniprot ID: -
• Organism: Vibrio sp. YMD68
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2767831..2778700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QF117_RS18500 (QF117_18500)	nadC	2768009..2768899 (+)	891	WP_282387512.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QF117_RS18505 (QF117_18505)	-	2769163..2769600 (+)	438	WP_282387514.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QF117_RS18510 (QF117_18510)	pilB	2769600..2771345 (+)	1746	WP_282387516.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QF117_RS18515 (QF117_18515)	pilC	2771467..2772693 (+)	1227	WP_282387517.1	type II secretion system F family protein	Machinery gene
QF117_RS18520 (QF117_18520)	pilD	2772831..2773700 (+)	870	WP_282387518.1	A24 family peptidase	Machinery gene
QF117_RS18525 (QF117_18525)	coaE	2773791..2774444 (+)	654	WP_282387519.1	dephospho-CoA kinase	-
QF117_RS18530 (QF117_18530)	zapD	2774431..2775171 (+)	741	WP_282387520.1	cell division protein ZapD	-
QF117_RS18535 (QF117_18535)	yacG	2775378..2775575 (+)	198	WP_282387521.1	DNA gyrase inhibitor YacG	-
QF117_RS18540 (QF117_18540)	rplS	2775872..2776225 (-)	354	WP_017036649.1	50S ribosomal protein L19	-
QF117_RS18545 (QF117_18545)	trmD	2776274..2777023 (-)	750	WP_282387524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QF117_RS18550 (QF117_18550)	rimM	2777071..2777625 (-)	555	WP_282387525.1	ribosome maturation factor RimM	-
QF117_RS18555 (QF117_18555)	rpsP	2777658..2777906 (-)	249	WP_017036646.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32353.59 Da
• Isoelectric Point: 7.5836

>NTDB_id=826783 QF117_RS18520 WP_282387518.1 2772831..2773700(+) (pilD) [Vibrio sp. YMD68]
MQVLELYPWLFTTFSVVFGLIIGSFLNVVIHRLPIIMEREWRQECADSFPEYKITPPEGHYSLSIPRSTCPKCQTQLRLI
DNIPILSWLALKGKCHKCSNAISARYPLVELLTALMSGAVAAVFGPSYFTIALIFFTFVLIAATFIDLDTMLLPDQLTLP
LVWSGIALALFQISSVSLQDSVIGAIAGYLCLWLVFWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSLVGL
VFGVIQLRLQQKGIDKAFPFGPYLAIAGWVSLMWGEQIMAWYFRSFLGM

Nucleotide

• Length: 870 bp

>NTDB_id=826783 QF117_RS18520 WP_282387518.1 2772831..2773700(+) (pilD) [Vibrio sp. YMD68]
ATGCAAGTGCTTGAGCTATACCCTTGGTTATTTACCACTTTTTCGGTCGTTTTTGGCCTGATTATTGGTAGTTTTTTAAA
CGTAGTGATCCATCGGTTGCCAATTATCATGGAACGCGAGTGGCGCCAAGAGTGTGCCGATTCGTTCCCTGAATACAAAA
TTACACCGCCAGAAGGGCATTATTCTCTTAGTATTCCTCGCTCAACCTGCCCAAAGTGCCAGACTCAATTGCGCCTCATC
GATAATATCCCCATTCTCAGCTGGCTAGCTCTCAAAGGTAAATGCCATAAGTGCAGTAATGCGATTTCTGCTCGGTACCC
TCTGGTCGAGCTATTGACCGCCTTAATGAGTGGCGCTGTTGCGGCTGTTTTTGGTCCTAGCTACTTTACGATTGCCCTTA
TCTTTTTCACTTTTGTTTTGATTGCCGCCACTTTTATCGATTTAGATACGATGCTGCTGCCGGATCAACTGACACTTCCT
TTGGTTTGGTCTGGTATTGCACTCGCACTCTTTCAAATAAGTTCAGTGTCTCTACAAGATTCCGTGATTGGTGCCATTGC
CGGATATTTATGTTTATGGCTTGTCTTCTGGGGTTTCAAACTCCTCACTGGCAAGGAAGGCATGGGGTATGGCGACTTTA
AGCTCCTCGCTGCTCTTGGCGCCTGGCTTGGTTGGCAATACTTACCCATGATTATTCTACTCTCTTCATTAGTCGGACTG
GTTTTTGGCGTTATTCAGTTAAGGCTTCAACAAAAGGGAATAGACAAAGCCTTCCCTTTTGGCCCTTACCTCGCCATTGC
CGGATGGGTGAGTTTAATGTGGGGTGAACAGATTATGGCGTGGTACTTTCGTTCATTTTTGGGCATGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	70.139	99.654	0.699
pilD	Acinetobacter baumannii D1279779	52.83	91.696	0.484
pilD	Acinetobacter nosocomialis M2	52.83	91.696	0.484
pilD	Neisseria gonorrhoeae MS11	47.692	89.965	0.429