Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QI003_RS12485 Genome accession   NZ_CP124601
Coordinates   2484158..2485408 (+) Length   416 a.a.
NCBI ID   WP_069149613.1    Uniprot ID   -
Organism   Bacillus stercoris strain BS21     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2479158..2490408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QI003_RS12455 (QI003_12455) - 2479248..2480534 (+) 1287 WP_040083147.1 pitrilysin family protein -
  QI003_RS12460 (QI003_12460) efpI 2480589..2481317 (+) 729 WP_041521338.1 EF-P-5 aminopentanone reductase -
  QI003_RS12465 (QI003_12465) - 2481398..2481655 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  QI003_RS12470 (QI003_12470) - 2481785..2482576 (+) 792 WP_040083145.1 YmfK family protein -
  QI003_RS12475 (QI003_12475) rodZ 2482643..2483509 (+) 867 WP_231560781.1 cell shape determination protein RodZ -
  QI003_RS12480 (QI003_12480) pgsA 2483559..2484140 (+) 582 WP_014664019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QI003_RS12485 (QI003_12485) cinA 2484158..2485408 (+) 1251 WP_069149613.1 competence/damage-inducible protein A Machinery gene
  QI003_RS12490 (QI003_12490) recA 2485581..2486627 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  QI003_RS12495 (QI003_12495) - 2486795..2487970 (+) 1176 WP_069149614.1 serine hydrolase domain-containing protein -
  QI003_RS12500 (QI003_12500) rny 2488247..2489809 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45414.79 Da        Isoelectric Point: 5.1474

>NTDB_id=826618 QI003_RS12485 WP_069149613.1 2484158..2485408(+) (cinA) [Bacillus stercoris strain BS21]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLIEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETECLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECAAELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=826618 QI003_RS12485 WP_069149613.1 2484158..2485408(+) (cinA) [Bacillus stercoris strain BS21]
ATGGAATTTCCAAAAAAAGCTGAAATTATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGACAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGATTTCATTATTTTTTCAGGAGGTCTTGGACCCACAAAAGATGACCTG
ACGAAAGAAACGATTGCAAATACGCTGGGGCGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAGCGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCATAGAGCATGAATCGCGCTTCTATATGCTTCTTCCTGGGCCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTCAAAAAGATGGGTTCAAATGAAAAAATCGTGTCCACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTAGCTGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAATGTCTGCTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGGTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGCGGGCTTTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAACATTATTTGCCGGCGGTGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTGAAGAAGGACACATTAGATCGTTTTGGAGCGGTCAGCAAGGAATGCGCAGCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGTATTTCCGCAAATGGGAAAGAAGAGGTTCATGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGCGCCAAATATGGCTGCCATTTAATCTTAAAGCTTTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.077

100

0.981
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377