Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QIF44_RS18665 Genome accession   NZ_CP124546
Coordinates   4121034..4122293 (+) Length   419 a.a.
NCBI ID   WP_032975227.1    Uniprot ID   -
Organism   Stenotrophomonas indicatrix strain MGMM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4116034..4127293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIF44_RS18645 (QIF44_18645) - 4116760..4117872 (+) 1113 WP_032975174.1 glycosyltransferase family 4 protein -
  QIF44_RS18650 (QIF44_18650) - 4117866..4119770 (-) 1905 WP_032975175.1 hypothetical protein -
  QIF44_RS18655 (QIF44_18655) - 4119770..4120207 (-) 438 WP_313114357.1 pilin -
  QIF44_RS18660 (QIF44_18660) pilA/pilAI 4120268..4120681 (-) 414 WP_032975177.1 pilin Machinery gene
  QIF44_RS18665 (QIF44_18665) pilC 4121034..4122293 (+) 1260 WP_032975227.1 type II secretion system F family protein Machinery gene
  QIF44_RS18670 (QIF44_18670) - 4122301..4123164 (+) 864 WP_025874291.1 A24 family peptidase -
  QIF44_RS18675 (QIF44_18675) coaE 4123176..4123787 (+) 612 WP_032975178.1 dephospho-CoA kinase -
  QIF44_RS18680 (QIF44_18680) - 4123840..4124226 (-) 387 WP_025874288.1 hypothetical protein -
  QIF44_RS18685 (QIF44_18685) - 4124809..4126179 (-) 1371 WP_032975180.1 HAMP domain-containing sensor histidine kinase -
  QIF44_RS18690 (QIF44_18690) - 4126142..4126819 (-) 678 WP_025874286.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45694.07 Da        Isoelectric Point: 10.1180

>NTDB_id=826405 QIF44_RS18665 WP_032975227.1 4121034..4122293(+) (pilC) [Stenotrophomonas indicatrix strain MGMM10]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGTVKTKPKPLFGAAGSAIKPKD
IAFFSRQMATMMKSGVPIVGALDIIASGHKNPRMKKMVDSVRTDIEGGSSLYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIRKALFYPVMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWL
ILIALVGGIVGLIAAYKRSPKMQHGMDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNVSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=826405 QIF44_RS18665 WP_032975227.1 4121034..4122293(+) (pilC) [Stenotrophomonas indicatrix strain MGMM10]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAACCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGTTGGCCAAGAATGCCAACCTGCTTAGGGCCGAACTACGCCGCC
AAGGCATCAATCCGGGAACGGTGAAAACGAAGCCGAAGCCATTGTTCGGCGCCGCTGGTAGTGCGATCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGTCAGATGGCGACAATGATGAAATCCGGTGTGCCCATTGTTGGCGCCTTGGACATCATCGCGAG
CGGGCATAAGAACCCGCGCATGAAAAAAATGGTTGACTCCGTGCGTACCGACATCGAGGGCGGATCCTCCTTGTATGAGG
CGGTCAGCAAGCATCCGGTGCAGTTCGACGAGCTCTACCGCAACTTGGTGCGGGCGGGCGAAGGGGCGGGTGTACTTGAA
ACGGTGCTGGACACCGTTGCTACTTACAAAGAGAACATCGAAGCCCTGAAAGGCAAGATTCGCAAGGCACTCTTCTATCC
CGTCATGGTGATGGCAGTAGCGCTCTTGGTCAGCAGCATTCTGCTCGTTTGGGTGGTCCCGCAATTCGAAGATGTATTTA
AGGGCTTCGGCGCCGAACTGCCTGCCTTCACTCAGATGATTGTCAACCTATCCAGATTTATGGTGTCTTGGTGGTGGTTG
ATACTGATCGCTTTAGTTGGAGGCATTGTTGGGCTGATCGCCGCCTACAAGCGCTCACCAAAGATGCAGCACGGAATGGA
TCGCCTGATCCTGAAGGTGCCAGTGATCGGCCAGATCATGCACAACAGCGCCATTGCGCGCTTCGCCCGCACCACGGCAG
TGACCTTCAAGGCCGGTGTACCGCTAGTGGAGGCGCTCGGCATCGTGGCTGGCGCTACCGGCAACACTGTGTACGAAGAG
GCGGTGCTGCGGATGCGCGATGACGTGTCTGTCGGCTATCCGGTCAACGTATCCATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGTATCGGCGAAGAGGCTGGCGCCCTGGACGCCATGCTGTTCAAAGTGGCTGAATACTATG
AACAGGAGGTCAACAATGCTGTTGACGCCCTGAGCAGTCTGCTGGAACCGATGATCATGGTATTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATTTTCAAGCTCGCTTCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

52.882

95.227

0.504
  pilC Acinetobacter baylyi ADP1

49.754

96.897

0.482
  pilC Acinetobacter baumannii D1279779

49.386

97.136

0.48
  pilG Neisseria gonorrhoeae MS11

44.5

95.465

0.425
  pilG Neisseria meningitidis 44/76-A

43.89

95.704

0.42
  pilC Vibrio cholerae strain A1552

42.365

96.897

0.411
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394