Detailed information NTG0826254

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QJS71_RS06820
• Genome accession: NZ_CP124531
• Coordinates: 1613186..1614316 (+)
• Length: 376 a.a.
• NCBI ID: WP_075287180.1
• Uniprot ID: -
• Organism: Xanthomonas campestris strain TJ
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1608186..1619316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJS71_RS06795	-	1608457..1609047 (-)	591	WP_029628896.1	M23 family metallopeptidase	-
QJS71_RS06800	-	1609191..1609613 (-)	423	WP_011037886.1	HU family DNA-binding protein	-
QJS71_RS06805	proC	1610154..1611014 (-)	861	WP_050912119.1	pyrroline-5-carboxylate reductase	-
QJS71_RS06810	-	1611055..1611738 (-)	684	WP_050912120.1	YggS family pyridoxal phosphate-dependent enzyme	-
QJS71_RS06815	pilT	1612026..1613063 (+)	1038	WP_003489919.1	type IV pilus twitching motility protein PilT	Machinery gene
QJS71_RS06820	pilU	1613186..1614316 (+)	1131	WP_075287180.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QJS71_RS06825	-	1614596..1615270 (+)	675	WP_014508435.1	YitT family protein	-
QJS71_RS06830	-	1615284..1616183 (-)	900	WP_019237456.1	DUF72 domain-containing protein	-
QJS71_RS06835	-	1616406..1617668 (-)	1263	WP_075288043.1	hypothetical protein	-
QJS71_RS06840	-	1617665..1618204 (-)	540	WP_012437807.1	DNA-3-methyladenine glycosylase I	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41996.31 Da
• Isoelectric Point: 7.0160

>NTDB_id=826254 QJS71_RS06820 WP_075287180.1 1613186..1614316(+) (pilU) [Xanthomonas campestris strain TJ]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYKAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEIAEVR

Nucleotide

• Length: 1131 bp

>NTDB_id=826254 QJS71_RS06820 WP_075287180.1 1613186..1614316(+) (pilU) [Xanthomonas campestris strain TJ]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCACCAGAAGGCGTCGGATCTGTTCATCACCTCTGGCAT
GCCGCCGGCGATCAAGGTGCATGGCAAGATCAGCCCGATCACCCAGACGCCGCTGACCGCGCAGCAGAGTCGCGACCTGG
TGTTGAACGTGATGACGCCCTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTGTCCGGG
GTGGGGCGGTTCCGTGTGAGCTGCTTCTATCAGCGCAACCAGGTGGGCATGGTGCTGCGGCGGATCGAGACGCGCATTCC
CACCGTGGAAGAGCTGAGCCTGCCGCCGGTGATCAAGACACTGGCGATGACCAAGCGCGGCATCATCATCTTTGTCGGCG
CCACCGGCACCGGCAAGTCGACATCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAGTTCGTGCACAAGCACGAGGGTTGCATCATCACCCAGCGCGAAGTCGGCATCGATACCGATAG
CTGGGAAAATGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAAGTGCGGACCCGCGAAGGCA
TGGACCATGCCATCGCCTTCGCCGAAACCGGGCACCTGGTGCTGTGTACGCTGCACGCCAACAACGCCAACCAGGCGATG
GACCGCATCATTAACTTCTTCCCGGAAGATCGCCGCAATCAGCTGCTGATGGACCTGTCGCTCAACCTCAAGGGTGTGGT
GGCGCAGCAGTTGATCCCGACCCCGGATGGCCGCGGCCGCCGCGTGGCGATGGAGATCATGCTCGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GATCAGAGCCTGTTCGAGCTGTATAAGGCGGGCGAGATCAGCTACGAAGACGCACTGCGCTACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTCTCGCAAGGCGGCGATGCCAAGACGCTGTCGCAGGGGCTGGATGGCGTGGAGATTGCCG
AGGTTCGGTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-272)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.575	97.606	0.66
pilU	Acinetobacter baylyi ADP1	63.866	94.947	0.606
pilU	Vibrio cholerae strain A1552	53.652	94.681	0.508
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.017	94.947	0.399
pilT	Acinetobacter baumannii strain A118	40.407	91.489	0.37
pilT	Acinetobacter nosocomialis M2	40.407	91.489	0.37
pilT	Acinetobacter baumannii D1279779	40.407	91.489	0.37
pilT	Pseudomonas aeruginosa PAK	41.194	89.096	0.367