Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QJS82_RS00565 Genome accession   NZ_CP124526
Coordinates   127378..129090 (+) Length   570 a.a.
NCBI ID   WP_281490868.1    Uniprot ID   -
Organism   Psychrobacter sp. WB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 121258..129090 127378..129090 within 0


Gene organization within MGE regions


Location: 121258..129090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJS82_RS00525 (QJS82_00525) pilM 122539..122787 (+) 249 WP_281490860.1 pilus assembly protein PilM -
  QJS82_RS00530 (QJS82_00530) - 122802..123503 (-) 702 WP_281490861.1 IS1 family transposase -
  QJS82_RS00535 (QJS82_00535) - 123605..123913 (+) 309 WP_281490862.1 PilN domain-containing protein -
  QJS82_RS00540 (QJS82_00540) pilO 124009..124649 (+) 641 Protein_101 type 4a pilus biogenesis protein PilO -
  QJS82_RS00545 (QJS82_00545) - 124649..125182 (+) 534 WP_281490864.1 pilus assembly protein PilP -
  QJS82_RS00550 (QJS82_00550) - 125210..125845 (+) 636 WP_281490865.1 AMIN domain-containing protein -
  QJS82_RS13715 - 125906..127212 (+) 1307 Protein_104 transposase -
  QJS82_RS00565 (QJS82_00565) pilQ 127378..129090 (+) 1713 WP_281490868.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 61731.46 Da        Isoelectric Point: 4.5253

>NTDB_id=826212 QJS82_RS00565 WP_281490868.1 127378..129090(+) (pilQ) [Psychrobacter sp. WB2]
MSKQYSYDGLTAVNFTAGNDGGGNVSIALANEAIPVDFQRQGNKLVVRLTGSTVPRNLLRRLNVDSGLVDSIDTKNQGQN
GVITINVKEDYEYQAYQSGNQLNINIRKPELLREPTLEEKVYSGEALFMEFQDVEIRSVLDILAQFTDMNIVASDSVAGN
ITLRLINVPWDQVLDIILKSKNLGKRENGNVILVVPSTELAEQEARELEAQQAVESYAPLRTEYIRLSYAKAADVLTLIS
HGSGSSGGSGTGNTNSTDNNTLLSNRGTVTVDERTNTLIIKDVAESIENIYKLIGKIDIPVRQVMIEARIVSATDSFSKE
IGVRWGILSNGAANNRNLLVGGSNQTLWDLKDFDVETTTVNGQTVSYPKYDISRPDNLNVDLGVANPAGSIAFGLLSMSD
VMLDLELSALQADNRGEVISTPKILTADKQTAKVSSCTQIPYQEASASGATTTSFKEAALSLEATPNITPDGKIGLQLVI
TNGTPTIINNQVAIAEDSISTNVIVEDGQTIVLGGVFKNRSSNGVDKVPFLGDLPYIGRAFRRDVRNNSKEELLIFVTPK
LINDGISRLN

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=826212 QJS82_RS00565 WP_281490868.1 127378..129090(+) (pilQ) [Psychrobacter sp. WB2]
GTGAGTAAGCAGTATAGTTATGACGGTTTAACGGCGGTTAATTTTACCGCAGGCAATGATGGTGGCGGTAATGTCAGTAT
TGCGCTTGCCAACGAAGCCATTCCAGTTGACTTCCAGCGTCAAGGTAACAAGTTGGTTGTACGTTTAACCGGCAGTACCG
TACCGAGAAATTTATTACGTCGCTTAAACGTGGATAGTGGTCTGGTTGATAGTATTGATACTAAAAACCAAGGTCAAAAT
GGTGTGATCACTATCAATGTTAAAGAAGATTATGAGTATCAAGCTTATCAATCGGGTAACCAGTTAAATATCAATATCCG
CAAGCCTGAGCTACTTCGTGAGCCAACGCTTGAAGAAAAAGTATATAGCGGTGAAGCGCTATTTATGGAATTCCAAGACG
TCGAAATCCGTAGTGTGTTAGATATCTTGGCACAGTTTACCGATATGAATATCGTGGCTAGTGATTCGGTCGCGGGTAAT
ATCACCTTGCGCCTGATTAATGTGCCTTGGGATCAAGTGCTAGATATTATTCTAAAGAGTAAAAATCTTGGTAAGCGTGA
AAATGGCAACGTGATTTTGGTTGTGCCCTCGACTGAGCTTGCTGAACAAGAAGCTCGTGAGCTTGAAGCGCAGCAAGCGG
TTGAGTCGTATGCGCCGCTACGCACGGAATACATTCGCTTAAGCTATGCTAAAGCGGCAGATGTTTTGACCCTTATCTCT
CACGGTAGTGGCTCATCAGGTGGCAGCGGCACTGGCAACACAAATTCTACTGATAACAATACCTTGTTGTCTAACCGTGG
TACGGTAACGGTTGATGAGCGTACCAATACCTTGATTATCAAAGATGTCGCTGAAAGCATTGAAAATATTTATAAGCTGA
TTGGTAAAATTGATATTCCAGTCCGTCAAGTAATGATTGAAGCGCGTATTGTTAGTGCTACTGATAGCTTTAGTAAAGAG
ATCGGCGTGCGTTGGGGTATCTTGTCAAACGGCGCTGCCAATAACCGTAACTTGTTGGTCGGTGGTAGTAATCAGACGCT
ATGGGACTTAAAAGATTTTGACGTAGAAACAACGACAGTGAATGGTCAAACGGTTTCTTATCCTAAATATGACATCAGCC
GCCCTGATAACTTAAACGTTGACTTAGGTGTTGCTAATCCAGCGGGTAGTATCGCTTTTGGGCTACTTAGCATGTCAGAT
GTGATGCTCGATCTTGAGCTATCAGCACTACAAGCCGATAACCGCGGTGAAGTGATTTCGACACCAAAGATTTTGACGGC
TGATAAACAAACTGCAAAAGTATCTTCTTGTACACAAATTCCTTATCAAGAAGCCTCGGCCAGTGGCGCGACCACGACCA
GCTTTAAAGAAGCGGCATTAAGTCTAGAAGCGACGCCAAACATTACGCCTGATGGCAAAATTGGTTTGCAACTTGTTATT
ACCAATGGCACGCCAACGATTATTAATAATCAGGTAGCGATCGCTGAAGATTCAATCTCGACCAACGTCATTGTTGAAGA
CGGTCAGACCATTGTTCTAGGCGGGGTCTTTAAAAATCGTAGCAGTAATGGTGTCGATAAAGTACCTTTCTTAGGTGACT
TGCCTTATATCGGTCGTGCCTTCCGCCGTGATGTCCGTAATAACTCTAAAGAAGAGCTGCTCATCTTTGTCACGCCAAAA
TTGATTAATGATGGCATCAGCCGTTTAAATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(150-196)

Bacterial type II and III secretion system protein (Secretin)

(409-562)

Bacterial type II/III secretion system short domain (Secretin_N)

(223-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

52.462

100

0.542
  pilQ Acinetobacter baumannii strain A118

52.462

100

0.542
  comQ Acinetobacter baylyi ADP1

52.87

100

0.533
  pilQ Pseudomonas aeruginosa PAK

41.964

98.246

0.412
  pilQ Vibrio campbellii strain DS40M4

38.957

100

0.393
  pilQ Legionella pneumophila strain ERS1305867

38.004

100

0.381
  pilQ Legionella pneumophila strain Lp02

37.895

100

0.379
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

37.345

99.123

0.37
  pilQ Vibrio cholerae strain A1552

37.345

99.123

0.37