Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QJR43_RS06685 Genome accession   NZ_CP124268
Coordinates   1354957..1356204 (+) Length   415 a.a.
NCBI ID   WP_003747614.1    Uniprot ID   A0A7X1C5A4
Organism   Listeria seeligeri strain L140     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1349957..1361204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR43_RS06665 (QJR43_06655) - 1351145..1352428 (+) 1284 WP_046328059.1 pitrilysin family protein -
  QJR43_RS06670 (QJR43_06660) - 1352512..1353243 (+) 732 WP_003747611.1 SDR family oxidoreductase -
  QJR43_RS06675 (QJR43_06665) - 1353293..1354228 (+) 936 WP_046328075.1 RodZ family helix-turn-helix domain-containing protein -
  QJR43_RS06680 (QJR43_06670) pgsA 1354313..1354891 (+) 579 WP_003747613.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJR43_RS06685 (QJR43_06675) cinA 1354957..1356204 (+) 1248 WP_003747614.1 competence/damage-inducible protein A Machinery gene
  QJR43_RS06690 (QJR43_06680) recA 1356476..1357522 (+) 1047 WP_003747615.1 recombinase RecA Machinery gene
  QJR43_RS06695 (QJR43_06685) rny 1357825..1359387 (+) 1563 WP_012985597.1 ribonuclease Y -
  QJR43_RS06700 (QJR43_06690) - 1359504..1360001 (+) 498 WP_003747618.1 GNAT family N-acetyltransferase -
  QJR43_RS06705 (QJR43_06695) - 1360006..1360809 (+) 804 WP_003747619.1 TIGR00282 family metallophosphoesterase -
  QJR43_RS06710 (QJR43_06700) - 1360826..1361188 (+) 363 WP_203577392.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45645.99 Da        Isoelectric Point: 5.6930

>NTDB_id=824689 QJR43_RS06685 WP_003747614.1 1354957..1356204(+) (cinA) [Listeria seeligeri strain L140]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPERLKEVIKIAENRSDILIFTGGLGPTEDDITKQ
ILAKHLKKDLVTDQFHMNKITEYFTSRSRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FTRYANPLIVNENGGKTILESKILRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRVTATAKTKEEAAKLVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLERKITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSAETKQSILEVSS
QVIKEKGVVSSECASEMADNVRRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKNHQTEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDANA

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=824689 QJR43_RS06685 WP_003747614.1 1354957..1356204(+) (cinA) [Listeria seeligeri strain L140]
ATGGCAAGCGCAGAAATTATTGCTGTCGGAACAGAGTTATTATTAGGACAAATTGTTAATTCGAATGCTGCTTTTATATC
ACAAGAATTAGCGGCTGACGGAATTTATGTATATCATCATACGGTTGTTGGAGACAATCCTGAACGCTTAAAGGAAGTAA
TAAAAATTGCTGAAAATAGAAGTGATATCTTAATTTTCACGGGCGGACTTGGACCAACAGAAGATGATATTACCAAACAA
ATTTTAGCAAAACATTTAAAAAAAGATTTAGTAACTGATCAATTTCATATGAATAAAATTACCGAATACTTTACTTCAAG
AAGTCGAACAATGACTGAAAATAACAAATTACAAGCTGTTATTATTGAAGGATCAACAGTTTTAAACAATGACTATGGTT
TTGCAGCTGGAATGTTCTTAAAAGAAAATAACCATACATATATTTTACTACCTGGACCTCCTTCTGAAATGAAACCGATG
TTTACACGTTATGCCAATCCGCTAATTGTTAATGAGAATGGTGGAAAAACCATTTTAGAATCTAAAATATTACGATTTTT
TGGTATTGGCGAATCACAATTAGCTGCTGATTTAAATGATTTAATTGTCACTCAAGTAAACCCTACAATTGCTACTTATG
CTGGTGATAATGAAGTAGTCGTACGTGTAACGGCAACTGCGAAAACAAAAGAAGAAGCCGCGAAACTTGTTAATGAAACG
GAACAAGAAATTCTTCGTCGTGATGGGACTTTCCTATATGGTTACGGAGAAGTATCTTTGCCAGAATTAGTAACAGCCAT
GCTACTCGAACGAAAAATTACTATTTCTGCTGCCGAAAGTTTTACTGCTGGCTTGTTTCAAGCAGAAATTGCTCGTTTTC
CAGGTATTTCCAAGATTTTTAAAGGTGGAATGGTCACTTATAGCGCAGAAACGAAACAATCTATTTTGGAAGTTTCCTCG
CAAGTAATTAAAGAAAAAGGCGTAGTTAGCTCAGAATGCGCAAGCGAAATGGCAGATAATGTGCGACGTCTTTGCAATAC
AGATATAGGGATTAGCTTTACAGGTGTTGCAGGACCAGATAGTTTAGAAGGTCATCCAGCTGGTACTATATGGATTGGTC
TAAGTGTTAAAAATCATCAAACAGAAGCTTATCAGTTCGTTTACGGAAGAGATCGAAATCATAATCGTCGCCGGGCTGTA
AAACAAGGATTTCAATTAATTAAGCAATTTTTAGATGCGAATGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1C5A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.1

98.554

0.504
  cinA Streptococcus mitis SK321

49.403

100

0.499
  cinA Streptococcus pneumoniae TIGR4

49.048

100

0.496
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.489
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.489
  cinA Streptococcus pneumoniae R6

48.333

100

0.489
  cinA Streptococcus mutans UA159

49.029

99.277

0.487
  cinA Streptococcus pneumoniae D39

48.095

100

0.487
  cinA Streptococcus suis isolate S10

39.078

99.277

0.388