Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QJR31_RS07480 Genome accession   NZ_CP124262
Coordinates   1504183..1505430 (-) Length   415 a.a.
NCBI ID   WP_185488481.1    Uniprot ID   -
Organism   Listeria seeligeri strain L182     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1499183..1510430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR31_RS07455 (QJR31_07445) - 1499200..1499562 (-) 363 WP_046328061.1 RicAFT regulatory complex protein RicA family protein -
  QJR31_RS07460 (QJR31_07450) - 1499579..1500382 (-) 804 WP_185488483.1 TIGR00282 family metallophosphoesterase -
  QJR31_RS07465 (QJR31_07455) - 1500387..1500884 (-) 498 WP_003747618.1 GNAT family N-acetyltransferase -
  QJR31_RS07470 (QJR31_07460) rny 1501000..1502562 (-) 1563 WP_012985597.1 ribonuclease Y -
  QJR31_RS07475 (QJR31_07465) recA 1502865..1503911 (-) 1047 WP_003747615.1 recombinase RecA Machinery gene
  QJR31_RS07480 (QJR31_07470) cinA 1504183..1505430 (-) 1248 WP_185488481.1 competence/damage-inducible protein A Machinery gene
  QJR31_RS07485 (QJR31_07475) pgsA 1505496..1506074 (-) 579 WP_003747613.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QJR31_RS07490 (QJR31_07480) - 1506159..1507094 (-) 936 WP_046328075.1 RodZ family helix-turn-helix domain-containing protein -
  QJR31_RS07495 (QJR31_07485) - 1507144..1507875 (-) 732 WP_185488478.1 SDR family oxidoreductase -
  QJR31_RS07500 (QJR31_07490) - 1507959..1509242 (-) 1284 WP_185488476.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45660.02 Da        Isoelectric Point: 5.6930

>NTDB_id=824493 QJR31_RS07480 WP_185488481.1 1504183..1505430(-) (cinA) [Listeria seeligeri strain L182]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPERLKEVIKIAENRSDILIFTGGLGPTEDDITKQ
ILAKHLKKDLVTDQFHMNKITEYFTSRSRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FTRYANPLIVNENGGKTILESKILRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRVTATAKTKEEAAKLVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLERKITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSAETKQSILEVSS
QVIKEKGVVSSECASEMADNVRRLCNTDIGISFTGIAGPDSLEGHPAGTIWIGLSVKNHQTEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDANA

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=824493 QJR31_RS07480 WP_185488481.1 1504183..1505430(-) (cinA) [Listeria seeligeri strain L182]
ATGGCAAGCGCAGAAATTATTGCTGTCGGAACAGAGTTATTATTAGGACAAATTGTTAATTCGAATGCTGCTTTTATATC
ACAAGAATTAGCGGCTGACGGAATTTATGTATATCATCATACGGTTGTTGGAGACAATCCTGAACGCTTAAAGGAAGTAA
TAAAAATTGCTGAAAATAGAAGTGATATCTTAATTTTCACGGGCGGACTTGGACCAACAGAAGATGATATTACCAAACAA
ATTTTAGCAAAACATTTAAAAAAAGATTTAGTAACTGATCAATTTCATATGAATAAAATTACCGAATACTTTACTTCAAG
AAGTCGAACAATGACTGAAAATAACAAATTACAAGCTGTTATTATTGAAGGATCAACAGTTTTAAACAATGACTATGGTT
TTGCAGCTGGAATGTTCTTAAAAGAAAATAACCATACATATATTTTACTACCTGGACCTCCTTCTGAAATGAAACCGATG
TTTACACGTTATGCCAATCCGCTAATTGTTAATGAGAATGGTGGAAAAACCATTTTAGAATCTAAAATATTACGATTTTT
TGGTATTGGCGAATCACAATTAGCTGCTGATTTAAATGATTTAATTGTCACTCAAGTAAACCCTACAATTGCTACTTATG
CTGGTGATAATGAAGTAGTCGTACGTGTAACAGCAACTGCGAAAACAAAAGAAGAAGCCGCGAAACTTGTTAACGAAACG
GAACAAGAAATTCTTCGTCGTGATGGGACTTTCCTATATGGTTACGGAGAAGTATCTTTGCCAGAATTAGTAACAGCCAT
GCTACTCGAACGAAAAATTACTATTTCTGCTGCCGAAAGTTTTACTGCTGGCTTGTTTCAAGCAGAAATTGCTCGTTTTC
CAGGTATTTCCAAGATTTTTAAAGGTGGAATGGTCACTTATAGCGCAGAAACGAAACAATCTATTTTGGAAGTTTCCTCG
CAAGTAATTAAAGAAAAAGGCGTAGTTAGCTCAGAATGCGCAAGCGAAATGGCAGATAATGTGCGACGTCTTTGCAATAC
AGATATAGGGATTAGCTTTACAGGTATTGCAGGACCAGATAGTTTAGAAGGTCATCCAGCTGGTACTATATGGATTGGTC
TAAGTGTTAAAAATCATCAAACAGAAGCTTATCAGTTCGTTTACGGAAGAGATCGAAATCATAATCGTCGCCGGGCTGTA
AAACAAGGATTTCAATTAATTAAGCAATTTTTAGATGCGAATGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.856

98.554

0.501
  cinA Streptococcus mitis SK321

49.165

100

0.496
  cinA Streptococcus pneumoniae TIGR4

48.81

100

0.494
  cinA Streptococcus mitis NCTC 12261

48.21

100

0.487
  cinA Streptococcus pneumoniae Rx1

48.095

100

0.487
  cinA Streptococcus pneumoniae R6

48.095

100

0.487
  cinA Streptococcus pneumoniae D39

47.857

100

0.484
  cinA Streptococcus mutans UA159

48.786

99.277

0.484
  cinA Streptococcus suis isolate S10

39.078

99.277

0.388