Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QE259_RS13560 Genome accession   NZ_CP123609
Coordinates   2499358..2500599 (-) Length   413 a.a.
NCBI ID   WP_002293079.1    Uniprot ID   A0AB73A9G3
Organism   Enterococcus lactis strain J-2-A     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2494358..2505599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE259_RS13545 (QE259_13505) proC 2495340..2496146 (+) 807 WP_002293075.1 pyrroline-5-carboxylate reductase -
  QE259_RS13550 (QE259_13510) rny 2496225..2497781 (-) 1557 WP_002287336.1 ribonuclease Y -
  QE259_RS13555 (QE259_13515) recA 2498200..2499249 (-) 1050 WP_002293077.1 recombinase RecA Machinery gene
  QE259_RS13560 (QE259_13520) cinA 2499358..2500599 (-) 1242 WP_002293079.1 competence/damage-inducible protein A Machinery gene
  QE259_RS13565 (QE259_13525) pgsA 2500770..2501348 (-) 579 WP_002293081.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QE259_RS13570 (QE259_13530) - 2501557..2502480 (-) 924 WP_320188139.1 RodZ domain-containing protein -
  QE259_RS13575 (QE259_13535) yfmH 2502972..2504258 (-) 1287 WP_002293084.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  QE259_RS13580 (QE259_13540) yfmF 2504251..2505519 (-) 1269 WP_002293085.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45406.91 Da        Isoelectric Point: 4.8009

>NTDB_id=821569 QE259_RS13560 WP_002293079.1 2499358..2500599(-) (cinA) [Enterococcus lactis strain J-2-A]
MKAEIIAVGTELLLGQVVNTNATFLSEQLADLGIEVYYQTVVGDNQQRLEELIALAETRSELILLCGGLGPTEDDLTKEA
TAAHLGKSLIQNTEGYKKLLAYFETTHRKMTKNNLQQSQIIEGGVPLPNRTGLALGTFYQTDTHAYILLPGPPNELKPMF
VEQVRPLLEERFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDVQAGNQALLALE
EKIQERVGEYFYGYGDDNSLAKVVVELLKANKQTVTAAESLTAGAFQAALGDIAGVSDVFPGGFVTYSLQTKAGFLEIDP
ELLAEYGTVSKECVEQMAIQAREIARTDYSVAFTGVAGPDMLEGHPAGTVWIAISSKDGVVSEKYHFARDRAAIRYNAVM
QGFDLLRKQLLRK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=821569 QE259_RS13560 WP_002293079.1 2499358..2500599(-) (cinA) [Enterococcus lactis strain J-2-A]
ATGAAAGCAGAAATAATAGCTGTCGGAACAGAACTTTTACTAGGACAAGTCGTGAATACGAATGCCACTTTCTTGTCAGA
ACAGCTAGCTGATCTAGGTATCGAAGTTTATTATCAGACAGTCGTAGGAGATAATCAGCAGCGTTTAGAAGAGTTGATTG
CTCTAGCTGAAACAAGAAGTGAACTCATACTCTTATGTGGCGGATTAGGGCCGACAGAAGATGACCTGACAAAAGAAGCA
ACTGCGGCTCACCTCGGTAAGTCTCTCATACAAAATACGGAAGGATACAAAAAATTATTGGCATATTTTGAAACAACCCA
TCGAAAAATGACCAAAAACAATCTGCAACAGTCTCAAATCATCGAAGGCGGGGTTCCTCTACCAAATCGTACAGGGCTTG
CTTTAGGGACTTTTTATCAAACAGATACACATGCATATATCCTTCTTCCCGGTCCGCCTAATGAGTTGAAACCAATGTTT
GTGGAACAAGTACGTCCTTTACTAGAGGAACGTTTTCCTTCTGAAGAAAAACTGATTTCTAAAGTTTTGCGCTTTTATGG
GATTGGTGAATCGCGACTGGTCACTGAACTAAAAGATCTGATTGAAACACAGATCAATCCAACGATCGCTCCTTATGCCA
AACCAAATGAAGTGACATTGCGTCTAACAGTGAAAACAAAGGATGTTCAGGCAGGAAATCAAGCTCTTTTAGCATTGGAA
GAAAAGATTCAAGAACGAGTAGGAGAATATTTTTATGGATATGGCGATGATAATTCGTTAGCAAAAGTCGTAGTGGAACT
GCTGAAAGCAAACAAGCAGACTGTAACAGCGGCGGAAAGCTTGACAGCCGGTGCCTTCCAAGCCGCATTGGGCGATATTG
CTGGTGTATCTGATGTATTTCCAGGCGGCTTCGTTACCTACTCGCTCCAAACAAAAGCTGGTTTTCTGGAGATTGATCCG
GAGCTATTAGCAGAATATGGAACAGTCAGCAAAGAATGTGTGGAGCAGATGGCCATTCAAGCACGTGAGATAGCAAGAAC
AGATTACAGTGTAGCTTTCACCGGAGTGGCTGGACCGGACATGTTAGAAGGTCACCCTGCAGGAACAGTATGGATCGCTA
TTTCATCTAAAGATGGCGTGGTTTCAGAAAAATATCATTTTGCCAGAGACCGTGCGGCTATCAGATATAATGCGGTTATG
CAAGGATTTGATCTTTTGAGAAAACAGCTTTTAAGAAAATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.667

100

0.525
  cinA Streptococcus pneumoniae TIGR4

51.429

100

0.523
  cinA Streptococcus pneumoniae D39

51.19

100

0.521
  cinA Streptococcus pneumoniae Rx1

51.19

100

0.521
  cinA Streptococcus pneumoniae R6

51.19

100

0.521
  cinA Streptococcus mitis NCTC 12261

51.19

100

0.521
  cinA Streptococcus mutans UA159

51.566

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

47.573

99.758

0.475
  cinA Streptococcus suis isolate S10

41.546

100

0.416