Detailed information NTG0820030

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: QEP69_RS26045
• Genome accession: NZ_CP123209
• Coordinates: 5738406..5739623 (-)
• Length: 405 a.a.
• NCBI ID: WP_005732330.1
• Uniprot ID: A0A3M4TFK7
• Organism: Pseudomonas amygdali pv. aesculi strain 1804
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5733406..5744623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QEP69_RS26010	-	5733440..5734738 (-)	1299	WP_005732325.1	NAD(P)/FAD-dependent oxidoreductase	-
QEP69_RS30085	-	5734835..5735071 (-)	237	WP_327203937.1	DUF3094 family protein	-
QEP69_RS26015	-	5734956..5735489 (-)	534	WP_005732326.1	MOSC domain-containing protein	-
QEP69_RS26020	-	5735486..5736115 (-)	630	WP_003430735.1	DUF1780 domain-containing protein	-
QEP69_RS26025	-	5736257..5736508 (+)	252	Protein_5134	hypothetical protein	-
QEP69_RS26030	yacG	5736706..5736915 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
QEP69_RS26035	coaE	5736912..5737535 (-)	624	WP_005732328.1	dephospho-CoA kinase	-
QEP69_RS26040	pilD	5737532..5738404 (-)	873	WP_010216946.1	A24 family peptidase	Machinery gene
QEP69_RS26045	pilC	5738406..5739623 (-)	1218	WP_005732330.1	type II secretion system F family protein	Machinery gene
QEP69_RS26050	pilB	5739626..5741320 (-)	1695	WP_010216952.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QEP69_RS26055	-	5741548..5741976 (+)	429	WP_005732335.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QEP69_RS26060	-	5742912..5743457 (-)	546	WP_010216954.1	DUF1523 family protein	-
QEP69_RS26065	-	5743577..5744575 (+)	999	WP_005732338.1	ATP-grasp domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44117.07 Da
• Isoelectric Point: 10.2266

>NTDB_id=820030 QEP69_RS26045 WP_005732330.1 5738406..5739623(-) (pilC) [Pseudomonas amygdali pv. aesculi strain 1804]
MASKAAKVIVYTWEGVDKKGTKTSGELNGHNLALVKAQLRKQGINPTKVRKKSASIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRSLVESLKQEVSAGNSFATALRRKPEYFDELFCNLVDAGEQAGALESLLDRVASYKEKT
EKLKAKIKKAMTYPAAVLIVAIIVSGILLIKVVPQFQSIFSSFGAELPAFTLMVIGLSDIVQKWWLAIVFAFFSGIFALK
RVYKKSQKFRDGLDRLLLKVPIIGPLIFKSSVARYARTLSTTFAAGVPLVEALDSVAGATGNVVFKNAVQKVKQDVSTGM
QLNFSMRSTGVFPTLAIQMTAIGEESGALDTMLDKVATYYEDEVDNMVDNLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=820030 QEP69_RS26045 WP_005732330.1 5738406..5739623(-) (pilC) [Pseudomonas amygdali pv. aesculi strain 1804]
ATGGCCAGCAAGGCAGCAAAAGTCATCGTTTACACTTGGGAAGGTGTCGACAAGAAAGGCACCAAGACCAGCGGCGAACT
GAACGGCCATAACCTGGCACTCGTAAAAGCCCAGTTGCGCAAGCAAGGTATCAACCCCACCAAGGTACGCAAAAAATCTG
CGTCGATCTTCGGCAAAGGCAAGAAGATTAAGCCATTGGACATCGCGTTTTTTTCTCGGCAGATGGCAACGATGATGAAG
GCTGGCGTGCCATTGCTGCAGTCGTTTGACATCATCAGTGAGGGTGCTGAAAATCCGAATATGCGGTCGCTGGTAGAATC
TCTAAAGCAGGAGGTTTCAGCCGGCAACAGCTTTGCCACCGCGTTACGAAGAAAACCAGAATACTTCGATGAGCTTTTCT
GTAATTTAGTGGATGCAGGGGAACAGGCGGGAGCACTTGAAAGCCTGCTGGACCGAGTAGCAAGCTACAAGGAGAAGACA
GAGAAGCTCAAGGCTAAGATAAAAAAGGCCATGACCTACCCGGCCGCAGTATTGATTGTGGCGATCATCGTTTCAGGTAT
TTTGCTTATAAAGGTTGTGCCGCAGTTTCAGTCAATTTTTTCCAGCTTTGGTGCGGAACTACCGGCCTTTACGTTAATGG
TTATCGGTCTTTCAGACATAGTACAAAAGTGGTGGCTAGCTATCGTATTCGCTTTTTTTTCTGGCATTTTTGCACTTAAA
CGAGTATACAAAAAATCTCAAAAATTTCGTGACGGACTTGATCGTTTATTATTAAAAGTACCGATAATTGGCCCGTTAAT
TTTTAAATCCTCGGTCGCACGATACGCCCGAACCCTTTCAACTACGTTCGCCGCTGGTGTTCCGCTGGTAGAGGCTCTTG
ATTCGGTCGCTGGGGCCACTGGCAACGTAGTCTTCAAAAACGCGGTCCAAAAAGTCAAACAGGACGTTTCCACTGGTATG
CAGTTGAATTTCTCGATGCGTTCGACAGGTGTGTTCCCTACCTTAGCGATCCAAATGACCGCAATTGGTGAGGAATCAGG
CGCGTTAGACACCATGCTGGACAAGGTAGCGACCTACTACGAGGATGAGGTCGACAATATGGTCGACAACCTAACCAGCC
TGATGGAGCCCATGATCATGGCTGTTCTGGGTGTCATCGTCGGCGGCCTTGTTATCGCCATGTACCTCCCCATTTTCAAA
CTCGGAAACGTCGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

3D structure

• AlphaFold DB: A0A3M4TFK7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	73.086	100	0.731
pilC	Acinetobacter baylyi ADP1	60.049	100	0.605
pilC	Acinetobacter baumannii D1279779	59.804	100	0.602
pilC	Legionella pneumophila strain ERS1305867	51.232	100	0.514
pilC	Vibrio campbellii strain DS40M4	42.365	100	0.425
pilC	Vibrio cholerae strain A1552	42.929	97.778	0.42
pilG	Neisseria gonorrhoeae MS11	42.065	98.025	0.412
pilG	Neisseria meningitidis 44/76-A	42.065	98.025	0.412
pilC	Thermus thermophilus HB27	38.404	99.012	0.38