Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QEP67_RS08490 Genome accession   NZ_CP123058
Coordinates   1610850..1612088 (+) Length   412 a.a.
NCBI ID   WP_048565642.1    Uniprot ID   A0AB73RJQ7
Organism   Bacillus cereus group sp. MS39     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1605850..1617088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS08460 (QEP67_08450) - 1605906..1607192 (+) 1287 WP_000411935.1 pitrilysin family protein -
  QEP67_RS08465 (QEP67_08455) - 1607292..1608005 (+) 714 WP_000759596.1 SDR family oxidoreductase -
  QEP67_RS08470 (QEP67_08460) - 1608081..1608329 (+) 249 WP_000114455.1 DUF3243 domain-containing protein -
  QEP67_RS08475 (QEP67_08465) - 1608469..1609254 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  QEP67_RS08480 (QEP67_08470) - 1609276..1610187 (+) 912 WP_000137490.1 helix-turn-helix domain-containing protein -
  QEP67_RS08485 (QEP67_08475) pgsA 1610251..1610829 (+) 579 WP_001052976.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QEP67_RS08490 (QEP67_08480) cinA 1610850..1612088 (+) 1239 WP_048565642.1 competence/damage-inducible protein CinA Machinery gene
  QEP67_RS08495 (QEP67_08485) recA 1612232..1612840 (+) 609 Protein_1664 recombinase RecA -
  QEP67_RS08500 (QEP67_08490) - 1612938..1613561 (+) 624 WP_000301531.1 hypothetical protein -
  QEP67_RS08505 (QEP67_08495) - 1613830..1614252 (+) 423 Protein_1666 recombinase RecA -
  QEP67_RS08510 (QEP67_08500) rny 1614733..1616298 (+) 1566 WP_000099731.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45413.94 Da        Isoelectric Point: 6.5085

>NTDB_id=818041 QEP67_RS08490 WP_048565642.1 1610850..1612088(+) (cinA) [Bacillus cereus group sp. MS39]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADILIFTGGLGPTKDDLTKET
ISSRLGEELVYDEKALASISEYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNRKVYILLPGPPKEMKPMY
ISYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAAKRIQHMED
LILERVGKFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPAEV
LSTDGAVSKECARYLAENVKGLLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDKPTVVFPLILSGSRQQIRERSVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=818041 QEP67_RS08490 WP_048565642.1 1610850..1612088(+) (cinA) [Bacillus cereus group sp. MS39]
ATGAATGCTGAAATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAGCGATTACAGCAGGCGATTG
AAGTTGCGGAAGAACGTGCTGACATACTTATTTTCACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATATCTTCTAGGTTGGGTGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCGATAAGCGAGTACTTTAAGCGTACAGG
TCGGGAGTTCACAGAGAATAATAAAAAGCAAGCGCTCGTTTTGAATGGAGCAACTGTATTTGCGAATGATCACGGCATGG
CACCTGGTATGGGGCTAAATAAGAACAGGAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCGATGTAT
ATAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTTTTCGGGAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCCCTTGCGAATG
ATGGAGAAGTGACACTACGTTTAACTGCCAAACATCAAAATGCTGATGAAGCTGCGAAACGAATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAAAATTTTTCTACGGGTATGATCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACCGGTGGTCTCTTTGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGCGGAAGTG
TTGTCTACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGGCTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAGCCGGGAACAGTATTCGTTGGATTGGCGA
TTAAGGATAAACCAACTGTAGTCTTTCCTCTTATTTTAAGTGGAAGTCGTCAACAAATTAGGGAACGTTCGGTGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.805

99.515

0.575
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus mitis SK321

46.89

100

0.476
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

45.933

100

0.466
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

41.005

91.748

0.376