Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QEN58_RS08630 Genome accession   NZ_CP122961
Coordinates   1912383..1913615 (-) Length   410 a.a.
NCBI ID   WP_280106690.1    Uniprot ID   -
Organism   Halomonas alkaliantarctica strain MSP3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1907383..1918615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN58_RS08595 (QEN58_08595) - 1907598..1907972 (+) 375 WP_071693131.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  QEN58_RS08600 (QEN58_08600) - 1908063..1908893 (-) 831 WP_280106684.1 helix-turn-helix transcriptional regulator -
  QEN58_RS08605 (QEN58_08605) - 1909268..1909609 (+) 342 WP_280106685.1 hypothetical protein -
  QEN58_RS08610 (QEN58_08610) - 1909638..1910525 (-) 888 WP_280106686.1 DNA replication terminus site-binding protein -
  QEN58_RS08615 (QEN58_08615) yacG 1910565..1910798 (-) 234 WP_280106687.1 DNA gyrase inhibitor YacG -
  QEN58_RS08620 (QEN58_08620) coaE 1910833..1911435 (-) 603 WP_280106688.1 dephospho-CoA kinase -
  QEN58_RS08625 (QEN58_08625) - 1911489..1912334 (-) 846 WP_280106689.1 A24 family peptidase -
  QEN58_RS08630 (QEN58_08630) pilC 1912383..1913615 (-) 1233 WP_280106690.1 type II secretion system F family protein Machinery gene
  QEN58_RS08635 (QEN58_08635) pilB 1913619..1915376 (-) 1758 WP_280106691.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QEN58_RS08640 (QEN58_08640) - 1915647..1916096 (+) 450 WP_280106918.1 pilin -
  QEN58_RS08645 (QEN58_08645) - 1916170..1916625 (+) 456 WP_280106692.1 pilin -
  QEN58_RS08650 (QEN58_08650) - 1916702..1917136 (+) 435 WP_280106693.1 anti-virulence regulator CigR family protein -
  QEN58_RS08655 (QEN58_08655) - 1917228..1918049 (+) 822 WP_280106694.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44818.71 Da        Isoelectric Point: 10.4141

>NTDB_id=817552 QEN58_RS08630 WP_280106690.1 1912383..1913615(-) (pilC) [Halomonas alkaliantarctica strain MSP3]
MAKTARRRQTPAIKLARWKWIGKGPQDRTLSGEMIGRSKAEVAAELTKQNIVIGRISKKGNLGGNGRINPNDIMVFARQM
ATMIRAGIPLLQALQVVAESLKKPAMVALIQHLMSDVSSGSSFSDALSRHPKQFDRLFVNLVNAGEQSGALDQMLDRIAT
YKEKVESLKSRVKKALWYPTAVMTIGIAVTMLLLIKVVPEFESMFQSFGAELPALTQMTVNLSELAQRYWLVALGAVITA
VLLLKISIQRSPKVAYRMHALLLRLPVIGDIMHKSAIARFSRTLATTFASGVPLVEGLDTAAGATGNKVYERAVVQTRQD
VSTGQQLHFAMRMTNRFPPLAIQMVSIGEEAGSLDAMLNRVADYYEEEVDNKVDALTSLMEPVIIVVLGVLVGGVVVSMY
LPIFDLGSAL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=817552 QEN58_RS08630 WP_280106690.1 1912383..1913615(-) (pilC) [Halomonas alkaliantarctica strain MSP3]
ATGGCTAAAACGGCACGTCGACGCCAAACGCCCGCCATCAAGCTAGCGCGCTGGAAATGGATCGGTAAAGGCCCCCAGGA
TAGAACGCTAAGCGGAGAGATGATTGGCCGCAGTAAAGCCGAAGTAGCCGCTGAGCTGACCAAGCAAAATATCGTTATCG
GCCGAATTAGTAAAAAGGGCAACCTTGGCGGCAACGGCCGTATTAATCCCAACGACATCATGGTCTTTGCGCGCCAAATG
GCCACCATGATTCGCGCTGGCATTCCCTTGCTACAAGCACTTCAGGTGGTGGCAGAGAGCCTCAAAAAACCTGCCATGGT
TGCCTTGATTCAACATCTGATGAGTGATGTATCATCGGGCTCCAGCTTCTCTGATGCATTGAGCCGTCACCCCAAACAGT
TTGATCGGCTGTTTGTTAACCTGGTTAACGCTGGCGAGCAGTCAGGTGCGCTGGATCAAATGCTTGATCGTATTGCGACT
TATAAAGAGAAAGTGGAATCGCTAAAGTCGCGAGTTAAGAAAGCGCTTTGGTACCCCACCGCCGTTATGACGATAGGCAT
TGCAGTGACCATGCTGCTGTTGATTAAAGTAGTGCCTGAATTTGAAAGCATGTTTCAAAGCTTTGGCGCTGAACTTCCTG
CACTAACCCAAATGACGGTGAATTTATCCGAGCTTGCCCAGCGTTACTGGCTAGTGGCGCTCGGCGCAGTGATTACCGCG
GTACTCCTGCTTAAAATAAGCATTCAGCGCTCGCCTAAAGTCGCCTACCGTATGCACGCTCTACTGCTTCGCTTACCGGT
CATTGGCGATATTATGCACAAATCTGCTATTGCTCGTTTTTCGCGCACCTTAGCAACCACCTTCGCCTCCGGCGTCCCGC
TCGTTGAAGGCTTAGACACCGCCGCTGGCGCTACAGGCAATAAAGTGTACGAGCGTGCGGTGGTGCAAACACGCCAAGAT
GTATCTACCGGGCAACAGCTGCACTTCGCCATGCGCATGACCAACCGTTTTCCTCCCCTGGCGATCCAGATGGTCAGTAT
CGGCGAGGAGGCGGGGTCGCTTGATGCCATGCTGAATCGCGTTGCTGATTACTACGAAGAAGAAGTCGATAATAAAGTCG
ATGCCCTCACGTCGCTGATGGAGCCGGTTATTATTGTGGTACTGGGTGTGCTAGTTGGGGGGGTGGTGGTCTCAATGTAT
CTGCCAATTTTTGATTTAGGCTCTGCTCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.376

97.317

0.49
  pilC Acinetobacter baylyi ADP1

51.813

94.146

0.488
  pilC Legionella pneumophila strain ERS1305867

48.522

99.024

0.48
  pilC Acinetobacter baumannii D1279779

50.914

93.415

0.476
  pilG Neisseria gonorrhoeae MS11

44.14

97.805

0.432
  pilC Vibrio campbellii strain DS40M4

42.543

99.756

0.424
  pilG Neisseria meningitidis 44/76-A

44.935

93.902

0.422
  pilC Vibrio cholerae strain A1552

42.26

99.268

0.42