Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QDY63_RS25230 Genome accession   NZ_CP122540
Coordinates   5477662..5478882 (+) Length   406 a.a.
NCBI ID   WP_032861912.1    Uniprot ID   -
Organism   Pseudomonas brenneri strain K5-sn1400     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5472662..5483882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY63_RS25205 (QDY63_25200) istB 5472970..5473725 (+) 756 WP_173406362.1 IS21-like element ISPsy14 family helper ATPase IstB -
  QDY63_RS25210 (QDY63_25205) - 5474061..5475278 (-) 1218 WP_169867175.1 integrase arm-type DNA-binding domain-containing protein -
  QDY63_RS25220 (QDY63_25215) - 5475559..5476965 (-) 1407 WP_289345112.1 O-antigen ligase -
  QDY63_RS25225 (QDY63_25220) - 5477048..5477458 (-) 411 WP_032861913.1 pilin -
  QDY63_RS25230 (QDY63_25225) pilC 5477662..5478882 (+) 1221 WP_032861912.1 type II secretion system F family protein Machinery gene
  QDY63_RS25235 (QDY63_25230) pilD 5478885..5479757 (+) 873 WP_032861911.1 A24 family peptidase Machinery gene
  QDY63_RS25240 (QDY63_25235) coaE 5479754..5480377 (+) 624 WP_032861910.1 dephospho-CoA kinase -
  QDY63_RS25245 (QDY63_25240) yacG 5480374..5480577 (+) 204 WP_032861907.1 DNA gyrase inhibitor YacG -
  QDY63_RS25250 (QDY63_25245) - 5480574..5480789 (-) 216 WP_032861905.1 hypothetical protein -
  QDY63_RS25255 (QDY63_25250) - 5480853..5481542 (-) 690 WP_032861903.1 energy-coupling factor ABC transporter permease -
  QDY63_RS25260 (QDY63_25255) - 5481725..5482354 (+) 630 WP_029292005.1 DUF1780 domain-containing protein -
  QDY63_RS25265 (QDY63_25260) - 5482394..5482567 (+) 174 WP_032861901.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44216.99 Da        Isoelectric Point: 10.2820

>NTDB_id=816326 QDY63_RS25230 WP_032861912.1 5477662..5478882(+) (pilC) [Pseudomonas brenneri strain K5-sn1400]
MNDVTVNSTATFAWEGTLRNGRKVSGETRGHSPAVIKAQLRRQGINPVRVQLRSSLLSGLRNPITPADIALFTRQLATLL
KAGIPLLQAFDMIGEGLDSRAMRTLTQGLKQEVAAGNNLSDALLKHPQCFSPLYCSLIAAGEQAGTLETLLERVATHLEK
SQRLKARIKKAMTYPLAVLLVAMLVSSILLIHVVPQFESLFAGSDTPLPRFTLLVIVLSEFMQGAWWMLLLAMSTTAWGL
RHSYRRHLGFRLWLDAGLLKMPLAGTLLKKTAVARYARTLATTFAAGVPLAQALDSVAAAAGNERFKRAIMRMRQDVAIG
MQLNRTMTASGLFPGMAIQMTAIGEESGALDSMLEKVADHYETDVDNLVDNLTSLMEPLIMVVLGSIVGALVIAMYLPIF
QFGTAF

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=816326 QDY63_RS25230 WP_032861912.1 5477662..5478882(+) (pilC) [Pseudomonas brenneri strain K5-sn1400]
ATGAATGATGTCACCGTGAACTCCACCGCCACCTTCGCCTGGGAAGGCACACTGCGCAATGGCCGCAAGGTGTCCGGTGA
AACCCGTGGCCATAGCCCGGCTGTGATCAAGGCCCAATTGCGCCGGCAAGGTATCAACCCGGTTCGGGTGCAACTCCGCT
CCAGCCTTCTTTCGGGCCTGCGCAACCCCATCACGCCTGCCGATATTGCCCTGTTCACTCGCCAACTGGCGACCCTGCTG
AAAGCGGGAATCCCCCTGCTGCAAGCCTTCGATATGATTGGCGAAGGCCTCGACAGCCGGGCCATGCGCACGCTGACCCA
AGGATTGAAGCAAGAGGTTGCCGCCGGCAACAACTTGAGCGATGCGTTATTGAAACACCCGCAGTGTTTCAGCCCCCTGT
ATTGCAGCCTGATTGCGGCAGGCGAACAGGCCGGCACCCTGGAAACCCTGCTGGAACGGGTCGCCACCCACCTGGAAAAG
AGCCAGCGCCTCAAGGCCCGGATCAAAAAAGCCATGACCTACCCGCTGGCGGTCCTGCTTGTGGCTATGCTGGTCAGCAG
CATCCTGCTGATCCACGTCGTGCCCCAGTTCGAGAGCCTGTTCGCCGGCAGCGACACGCCTCTGCCGCGCTTTACACTGC
TGGTTATCGTGCTATCAGAATTCATGCAAGGCGCGTGGTGGATGCTGTTGCTGGCCATGAGCACGACTGCCTGGGGGTTA
CGCCACAGCTACCGTCGACACCTTGGTTTTCGCCTCTGGCTGGACGCTGGTTTGTTGAAAATGCCGCTGGCAGGCACACT
GCTGAAAAAAACTGCGGTCGCCCGTTACGCCCGTACACTCGCCACCACCTTTGCCGCCGGCGTACCGCTGGCACAGGCGT
TGGATTCAGTGGCCGCAGCCGCCGGCAACGAGCGGTTCAAACGAGCCATCATGCGTATGCGCCAGGACGTGGCAATAGGA
ATGCAATTGAATCGAACCATGACCGCCAGCGGCCTGTTCCCTGGCATGGCGATACAGATGACAGCCATCGGCGAAGAGTC
GGGCGCACTGGACAGCATGCTGGAGAAGGTCGCCGATCATTATGAGACGGACGTCGACAACCTGGTGGACAACCTGACCA
GCCTGATGGAGCCGCTGATCATGGTGGTTCTCGGCAGTATTGTCGGGGCGCTGGTAATCGCCATGTACCTGCCGATCTTC
CAGTTCGGCACGGCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.828

97.537

0.564
  pilC Acinetobacter baylyi ADP1

51.515

97.537

0.502
  pilC Acinetobacter baumannii D1279779

51.263

97.537

0.5
  pilC Legionella pneumophila strain ERS1305867

47.859

97.783

0.468
  pilC Vibrio cholerae strain A1552

40.712

96.798

0.394
  pilG Neisseria gonorrhoeae MS11

39.594

97.044

0.384
  pilG Neisseria meningitidis 44/76-A

38.832

97.044

0.377
  pilC Vibrio campbellii strain DS40M4

38.677

96.798

0.374