Detailed information NTG0816327

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QDY63_RS25235
• Genome accession: NZ_CP122540
• Coordinates: 5478885..5479757 (+)
• Length: 290 a.a.
• NCBI ID: WP_032861911.1
• Uniprot ID: -
• Organism: Pseudomonas brenneri strain K5-sn1400
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5473885..5484757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDY63_RS25210 (QDY63_25205)	-	5474061..5475278 (-)	1218	WP_169867175.1	integrase arm-type DNA-binding domain-containing protein	-
QDY63_RS25220 (QDY63_25215)	-	5475559..5476965 (-)	1407	WP_289345112.1	O-antigen ligase	-
QDY63_RS25225 (QDY63_25220)	-	5477048..5477458 (-)	411	WP_032861913.1	pilin	-
QDY63_RS25230 (QDY63_25225)	pilC	5477662..5478882 (+)	1221	WP_032861912.1	type II secretion system F family protein	Machinery gene
QDY63_RS25235 (QDY63_25230)	pilD	5478885..5479757 (+)	873	WP_032861911.1	A24 family peptidase	Machinery gene
QDY63_RS25240 (QDY63_25235)	coaE	5479754..5480377 (+)	624	WP_032861910.1	dephospho-CoA kinase	-
QDY63_RS25245 (QDY63_25240)	yacG	5480374..5480577 (+)	204	WP_032861907.1	DNA gyrase inhibitor YacG	-
QDY63_RS25250 (QDY63_25245)	-	5480574..5480789 (-)	216	WP_032861905.1	hypothetical protein	-
QDY63_RS25255 (QDY63_25250)	-	5480853..5481542 (-)	690	WP_032861903.1	energy-coupling factor ABC transporter permease	-
QDY63_RS25260 (QDY63_25255)	-	5481725..5482354 (+)	630	WP_029292005.1	DUF1780 domain-containing protein	-
QDY63_RS25265 (QDY63_25260)	-	5482394..5482567 (+)	174	WP_032861901.1	DUF3094 family protein	-
QDY63_RS25270 (QDY63_25265)	-	5482628..5483926 (+)	1299	WP_032861900.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32238.38 Da
• Isoelectric Point: 7.6091

>NTDB_id=816327 QDY63_RS25235 WP_032861911.1 5478885..5479757(+) (pilD) [Pseudomonas brenneri strain K5-sn1400]
MTLDQLLILHPWLFVWCSLVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPRGPTYNLLHPNSCCPHCSAPIR
PWENIPVFSYLLLRGRCARCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDALV
LPLLWLGLILNYFELYVSLPDALLGAVAGYLSLWAVFWLFKLCTGKDGMGYGDFKLLAMLGAWGGWQILPLTLLLASLVG
AISGVILLRMRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=816327 QDY63_RS25235 WP_032861911.1 5478885..5479757(+) (pilD) [Pseudomonas brenneri strain K5-sn1400]
ATGACCCTGGACCAACTCCTGATCCTCCACCCCTGGCTGTTCGTCTGGTGTTCACTGGTGCTGGGGCTGATCGTCGGCAG
CTTCCTCAACGTACTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGACTGGCGCGCCCAGGCCCATGAAATACTTGGCC
TGCCTCCGGAGCCCCGCGGCCCGACCTACAACCTGTTGCATCCCAACTCCTGCTGCCCGCATTGCTCGGCGCCGATTCGC
CCGTGGGAAAATATCCCGGTATTCAGCTATCTGCTGCTCAGAGGGCGTTGTGCGCGGTGCCACGGCTCCATCAGCCCGCG
CTACCCGCTGACCGAGCTGGCCTGCGGGCTGCTCTCGGCATTTATCGCCTGGCACTACGGCTTCGGCTGGCCGGCCGCAG
GAGTCCTGTTTTTGAGCTGGGGCTTGCTGGCCATGAGCCTGATTGATGCCGATCACCAACTACTGCCGGATGCGCTGGTG
TTGCCACTGTTGTGGCTGGGGCTGATCCTCAATTACTTCGAACTGTACGTCAGCCTGCCCGACGCATTACTGGGCGCAGT
TGCTGGCTATCTGAGCCTGTGGGCAGTGTTCTGGCTGTTCAAGCTGTGTACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAACTACTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCATCGCTGGTAGGC
GCGATATCGGGGGTGATTCTGTTGCGCATGCGTAACGCGCAGACATCGGTGCCCCTGCCTTTTGGTCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.659	98.966	0.531
pilD	Vibrio campbellii strain DS40M4	51.786	96.552	0.5
pilD	Acinetobacter baumannii D1279779	49.819	95.517	0.476
pilD	Acinetobacter nosocomialis M2	49.097	95.517	0.469
pilD	Neisseria gonorrhoeae MS11	51.779	87.241	0.452