Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P8596_RS10410 Genome accession   NZ_CP122397
Coordinates   2005006..2006241 (+) Length   411 a.a.
NCBI ID   WP_224520230.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2000006..2011241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS10385 (P8596_10385) - 2001270..2001986 (+) 717 WP_224520233.1 SDR family oxidoreductase -
  P8596_RS10390 (P8596_10390) - 2002075..2002332 (+) 258 WP_224520232.1 DUF3243 domain-containing protein -
  P8596_RS10395 (P8596_10395) - 2002564..2003355 (+) 792 WP_034760078.1 DUF3388 domain-containing protein -
  P8596_RS10400 (P8596_10400) - 2003375..2004274 (+) 900 WP_224520231.1 helix-turn-helix domain-containing protein -
  P8596_RS10405 (P8596_10405) pgsA 2004356..2004934 (+) 579 WP_034760074.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P8596_RS10410 (P8596_10410) cinA 2005006..2006241 (+) 1236 WP_224520230.1 competence/damage-inducible protein A Machinery gene
  P8596_RS10415 (P8596_10415) recA 2006439..2007476 (+) 1038 WP_034760069.1 recombinase RecA Machinery gene
  P8596_RS10420 (P8596_10420) rny 2007922..2009481 (+) 1560 WP_224520229.1 ribonuclease Y -
  P8596_RS10425 (P8596_10425) - 2009643..2010446 (+) 804 WP_061809970.1 TIGR00282 family metallophosphoesterase -
  P8596_RS10430 (P8596_10430) spoVS 2010583..2010843 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44963.37 Da        Isoelectric Point: 6.0965

>NTDB_id=815345 P8596_RS10410 WP_224520230.1 2005006..2006241(+) (cinA) [Rossellomorea sp. DA94]
MNAEIIAVGSELLLGQIVNSNAQFISEQLAEMGVNVYYHTSVGDNPARLQQVIEVAKKRADILIFTGGLGPTKDDLTKET
IAHALGTTLSMDHDALESIKGYFQKVNREMTPNNEKQALILSGAYVLKNEHGMAPGMLLKKDGNAYMLLPGPPSEMRPMF
DKHGKQAILNLMKKKEVIHSRVLRFFGIGEAELETELEDLIDRQTNPTIAPLAGDGEVTLRLTAKHESRDIAVSLLDSVE
EKILNRVGEYFYGYNQDSLVEVGVHLLKEKGLTLSCAESLTGGLFQAQLTSIPGASDVLSGGVICYQDEIKKRILSVNDR
TLKQHSAVSEQCARELAENVRELFSTDIGISFTGVAGPDAHEGHPAGTVWIGLSMKDGTTKAYLLNLGGGRNGNRMRTAK
YGWHYLIKELS

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=815345 P8596_RS10410 WP_224520230.1 2005006..2006241(+) (cinA) [Rossellomorea sp. DA94]
ATGAATGCAGAAATAATAGCGGTTGGGTCCGAATTATTGCTCGGACAAATCGTCAATTCCAATGCACAATTCATTTCCGA
ACAGTTGGCTGAGATGGGAGTGAACGTATATTATCACACGAGTGTGGGGGATAACCCTGCCCGTTTACAGCAGGTCATTG
AGGTAGCAAAGAAGCGGGCGGACATATTGATCTTTACTGGAGGCCTTGGACCCACAAAGGATGATCTGACGAAAGAAACG
ATCGCCCATGCTTTAGGAACGACTTTAAGCATGGATCATGACGCATTGGAATCGATAAAAGGCTATTTTCAGAAGGTCAA
TCGTGAAATGACTCCCAATAATGAAAAACAAGCCCTCATATTATCCGGGGCCTATGTATTGAAGAACGAACACGGCATGG
CTCCGGGGATGCTGTTGAAAAAGGACGGGAATGCCTATATGCTTCTCCCCGGTCCGCCGTCTGAAATGAGGCCGATGTTC
GATAAGCACGGCAAACAGGCAATCCTGAACTTGATGAAGAAGAAAGAAGTCATCCATTCACGGGTACTTCGTTTCTTTGG
CATCGGGGAAGCAGAGCTCGAAACGGAATTAGAAGATCTGATCGACAGGCAAACCAATCCGACTATCGCCCCTCTCGCTG
GTGACGGGGAAGTGACCTTGAGGCTTACGGCTAAGCACGAGTCAAGGGATATTGCCGTGTCATTATTGGATTCGGTTGAA
GAAAAGATCTTGAACAGGGTGGGGGAATATTTCTACGGTTATAACCAGGATTCCCTTGTTGAAGTGGGGGTCCATTTATT
AAAAGAGAAGGGACTTACCCTATCATGCGCAGAAAGTTTGACTGGTGGACTGTTTCAGGCTCAACTGACGTCTATTCCCG
GGGCATCGGACGTTTTGAGCGGCGGGGTGATCTGCTATCAGGATGAGATCAAAAAAAGGATTCTATCTGTTAATGACCGT
ACACTGAAACAGCATTCAGCAGTCAGTGAGCAATGTGCACGGGAACTGGCTGAAAACGTTAGAGAGCTGTTTTCCACTGA
CATAGGGATCAGCTTTACAGGTGTAGCAGGACCCGACGCTCACGAAGGTCATCCTGCAGGGACCGTCTGGATTGGATTAT
CTATGAAGGATGGAACGACCAAGGCATATCTATTAAACCTTGGCGGTGGCCGGAATGGGAACCGGATGAGGACGGCGAAG
TATGGTTGGCACTATTTAATTAAAGAACTGAGTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.27

0.584
  cinA Streptococcus mutans UA159

50.125

97.567

0.489
  cinA Streptococcus mitis SK321

50.251

96.837

0.487
  cinA Streptococcus mitis NCTC 12261

49.749

96.837

0.482
  cinA Streptococcus pneumoniae TIGR4

48.995

96.837

0.474
  cinA Streptococcus pneumoniae Rx1

48.744

96.837

0.472
  cinA Streptococcus pneumoniae R6

48.744

96.837

0.472
  cinA Streptococcus pneumoniae D39

48.492

96.837

0.47
  cinA Streptococcus suis isolate S10

40.876

100

0.409