Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QA442_RS13430 Genome accession   NZ_CP121861
Coordinates   2581127..2582377 (-) Length   416 a.a.
NCBI ID   WP_069839433.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2576127..2587377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS13415 (QA442_13415) rny 2576726..2578288 (-) 1563 WP_003221010.1 ribonuclease Y -
  QA442_RS13420 (QA442_13420) - 2578565..2579740 (-) 1176 WP_095431320.1 serine hydrolase domain-containing protein -
  QA442_RS13425 (QA442_13425) recA 2579908..2580954 (-) 1047 WP_003245789.1 recombinase RecA Machinery gene
  QA442_RS13430 (QA442_13430) cinA 2581127..2582377 (-) 1251 WP_069839433.1 competence/damage-inducible protein A Machinery gene
  QA442_RS13435 (QA442_13435) pgsA 2582395..2582976 (-) 582 WP_014664019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QA442_RS13440 (QA442_13440) rodZ 2583026..2583892 (-) 867 WP_211095886.1 RodZ family helix-turn-helix domain-containing protein -
  QA442_RS13445 (QA442_13445) - 2583959..2584750 (-) 792 WP_040083145.1 YmfK family protein -
  QA442_RS13450 (QA442_13450) - 2584880..2585137 (-) 258 WP_003245199.1 DUF3243 domain-containing protein -
  QA442_RS13455 (QA442_13455) efpI 2585218..2585946 (-) 729 WP_071580729.1 EF-P-5 aminopentanone reductase -
  QA442_RS13460 (QA442_13460) - 2586001..2587287 (-) 1287 WP_040083147.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45467.84 Da        Isoelectric Point: 5.2539

>NTDB_id=814914 QA442_RS13430 WP_069839433.1 2581127..2582377(-) (cinA) [Bacillus stercoris strain Mal05]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLIEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECAAELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=814914 QA442_RS13430 WP_069839433.1 2581127..2582377(-) (cinA) [Bacillus stercoris strain Mal05]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGACAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGATTTCATTATTTTTTCAGGAGGTCTTGGACCCACAAAGGATGACCTG
ACGAAAGAAACGATTGCAAATACGCTGGGGCGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAGCGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCATAGAGCATGAATCGCGCTTCTATATGCTTCTTCCTGGGCCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTCAAAAAGATGGGTTCAAATGAAAAAATCGTGTCCACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCTGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAACGTCTGCTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGGTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGCGGGCTTTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAACATTATTTGCCGGCGGTGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTGAAGAAGGACACATTAGATCGTTTTGGAGCGGTCAGCAAGGAATGCGCAGCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCCGCAAATGGGAAAGAAGAGGTTCATGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGCGCCAAATATGGCTGCCATTTAATCTTAAAGCTTTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.317

100

0.983
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377