Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QBS20_RS17335 Genome accession   NZ_CP121843
Coordinates   3706238..3706558 (+) Length   106 a.a.
NCBI ID   WP_201911619.1    Uniprot ID   A0AAW5M5A3
Organism   Aeromonas veronii strain ANYA 16549     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3701238..3711558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS20_RS17320 yfbV 3701678..3702118 (-) 441 WP_201911617.1 terminus macrodomain insulation protein YfbV -
  QBS20_RS17325 - 3702423..3703625 (+) 1203 WP_005349210.1 acetate kinase -
  QBS20_RS17330 pta 3703680..3705860 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS20_RS17335 comEA/comE1 3706238..3706558 (+) 321 WP_201911619.1 ComEA family DNA-binding protein Machinery gene
  QBS20_RS17340 galU 3706655..3707566 (+) 912 WP_047436208.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS20_RS17345 - 3707780..3709177 (+) 1398 WP_201911621.1 peptide MFS transporter -
  QBS20_RS17350 - 3709252..3710223 (-) 972 WP_005339125.1 response regulator -
  QBS20_RS17355 - 3710463..3711161 (+) 699 WP_139440511.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11258.26 Da        Isoelectric Point: 9.9853

>NTDB_id=814641 QBS20_RS17335 WP_201911619.1 3706238..3706558(+) (comEA/comE1) [Aeromonas veronii strain ANYA 16549]
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKQTTTTAVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814641 QBS20_RS17335 WP_201911619.1 3706238..3706558(+) (comEA/comE1) [Aeromonas veronii strain ANYA 16549]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCGCCCAAGCAAACAACCACGACTGCGGTCGCCAAGGAGACCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTTAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGTCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

46.602

97.17

0.453
  comEA Vibrio cholerae C6706

46.602

97.17

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

58.491

0.387
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368
  comEA Vibrio campbellii strain DS40M4

37.143

99.057

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368